Rfxank protein (Dipodomys ordii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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co-expression

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Score

Rfxank

DNA-binding protein RFXANK. (256 aa)

Predicted Functional Partners:

Rfxap

0.999

Ciita

0.996

Rfx5

0.950

Hdac4

0.916

Rfx1

0.832

Hdac5

0.761

Hdac9

0.761

Raf1

0.722

Araf

0.722

Rfx7

0.698

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Araf	Raf1	ENSDORP00000019343	ENSDORP00000014702	Serine/threonine-protein kinase A-Raf.	RAF proto-oncogene serine/threonine-protein kinase.	0.901
Araf	Rfxank	ENSDORP00000019343	ENSDORP00000001351	Serine/threonine-protein kinase A-Raf.	DNA-binding protein RFXANK.	0.722
Ciita	Rfx1	ENSDORP00000002129	ENSDORP00000015531	MHC class II transactivator isoform X1.	MHC class II regulatory factor RFX1.	0.717
Ciita	Rfx5	ENSDORP00000002129	ENSDORP00000015021	MHC class II transactivator isoform X1.	DNA-binding protein RFX5.	0.916
Ciita	Rfxank	ENSDORP00000002129	ENSDORP00000001351	MHC class II transactivator isoform X1.	DNA-binding protein RFXANK.	0.996
Ciita	Rfxap	ENSDORP00000002129	ENSDORP00000002366	MHC class II transactivator isoform X1.	Regulatory factor X-associated protein.	0.975
Hdac4	Hdac5	ENSDORP00000021858	ENSDORP00000015416	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.980
Hdac4	Rfxank	ENSDORP00000021858	ENSDORP00000001351	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	DNA-binding protein RFXANK.	0.916
Hdac5	Hdac4	ENSDORP00000015416	ENSDORP00000021858	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.980
Hdac5	Rfxank	ENSDORP00000015416	ENSDORP00000001351	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	DNA-binding protein RFXANK.	0.761
Hdac9	Rfxank	ENSDORP00000023705	ENSDORP00000001351	Histone deacetylase 9 isoform X4.	DNA-binding protein RFXANK.	0.761
Raf1	Araf	ENSDORP00000014702	ENSDORP00000019343	RAF proto-oncogene serine/threonine-protein kinase.	Serine/threonine-protein kinase A-Raf.	0.901
Raf1	Rfxank	ENSDORP00000014702	ENSDORP00000001351	RAF proto-oncogene serine/threonine-protein kinase.	DNA-binding protein RFXANK.	0.722
Rfx1	Ciita	ENSDORP00000015531	ENSDORP00000002129	MHC class II regulatory factor RFX1.	MHC class II transactivator isoform X1.	0.717
Rfx1	Rfxank	ENSDORP00000015531	ENSDORP00000001351	MHC class II regulatory factor RFX1.	DNA-binding protein RFXANK.	0.832
Rfx1	Rfxap	ENSDORP00000015531	ENSDORP00000002366	MHC class II regulatory factor RFX1.	Regulatory factor X-associated protein.	0.872
Rfx5	Ciita	ENSDORP00000015021	ENSDORP00000002129	DNA-binding protein RFX5.	MHC class II transactivator isoform X1.	0.916
Rfx5	Rfxank	ENSDORP00000015021	ENSDORP00000001351	DNA-binding protein RFX5.	DNA-binding protein RFXANK.	0.950
Rfx5	Rfxap	ENSDORP00000015021	ENSDORP00000002366	DNA-binding protein RFX5.	Regulatory factor X-associated protein.	0.960
Rfx7	Rfxank	ENSDORP00000018336	ENSDORP00000001351	DNA-binding protein RFX7 isoform X2.	DNA-binding protein RFXANK.	0.698