Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rab13Ras-related protein Rab-13. (203 aa)    
Predicted Functional Partners:
Micall2
MICAL-like protein 2.
    
 0.984
Rab8b
Ras-related protein Rab-8B.
   
  0.971
Rabif
Guanine nucleotide exchange factor MSS4.
    
 
 0.954
Prkaca
cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.
     
 0.938
Prkacb
cAMP-dependent protein kinase catalytic subunit beta isoform X2; Belongs to the protein kinase superfamily.
     
 0.938
Gdi2
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
    
 0.922
Gdi1
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
    
 0.922
Rab8a
Ras-related protein Rab-8A.
   
  0.909
Rilpl2
RILP-like protein 2.
    
 
 0.874
Ehbp1l1
EH domain binding protein 1 like 1.
    
 0.871
Your Current Organism:
Dipodomys ordii
NCBI taxonomy Id: 10020
Other names: D. ordii
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