Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Abca3ATP-binding cassette sub-family A member 3. (1476 aa)    
Predicted Functional Partners:
Sftpb
Pulmonary surfactant-associated protein B isoform X1.
      
 0.833
Abca4
Retinal-specific ATP-binding cassette transporter.
    
 
 0.773
Nr1h4
Bile acid receptor isoform X1.
    
 0.772
Sftpc
Pulmonary surfactant-associated protein C isoform X2.
      
 0.688
Slc12a3
Solute carrier family 12 member 3.
    
 
 0.684
Abca2
ATP-binding cassette sub-family A member 2.
    
 
 0.683
Slco1a2
Solute carrier organic anion transporter family member.
      
 0.677
Lpcat1
Lysophosphatidylcholine acyltransferase 1.
   
 
 0.616
Shtn1
Shootin-1.
    
 
 0.571
Abcc12
Multidrug resistance-associated protein 9.
   
 0.571
Your Current Organism:
Dipodomys ordii
NCBI taxonomy Id: 10020
Other names: D. ordii
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