Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Pcdh20Protocadherin-20. (457 aa)    
Predicted Functional Partners:
Pcdh7
Protocadherin-7.
    
  0.931
Cenpa
Histone H3-like centromeric protein A isoform X1.
      
 0.923
Pcdh1
Protocadherin-1 isoform X1.
    
  0.829
Celsr3
Solute carrier family 26 member 6 isoform X1.
   
  0.816
Cutc
Copper homeostasis protein cutC homolog isoform X1.
      
 0.615
Ankrd23
Ankyrin repeat domain-containing protein 23.
    
 
 0.594
Bricd5
BRICHOS domain-containing protein 5.
      
 0.574
Nbas
Neuroblastoma-amplified sequence.
      
 0.573
Fam102a
Protein FAM102A.
      
 0.570
Tmem37
Voltage-dependent calcium channel gamma-like subunit.
      
 0.570
Your Current Organism:
Dipodomys ordii
NCBI taxonomy Id: 10020
Other names: D. ordii
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