Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cnot1CCR4-NOT transcription complex subunit 1. (824 aa)    
Predicted Functional Partners:
Cnot4
CCR4-NOT transcription complex subunit 4 isoform X2.
    
 0.996
Cnot2
CCR4-NOT transcription complex subunit 2 isoform X2.
   
 0.995
Cnot11
CCR4-NOT transcription complex subunit 11.
    
 0.994
Cnot10
CCR4-NOT transcription complex subunit 10 isoform X1.
    
 0.994
Cnot3
CCR4-NOT transcription complex subunit 3 isoform X2.
   
 0.994
Cnot7
CCR4-NOT transcription complex subunit 7 isoform X2.
   
 0.993
Cnot8
CCR4-NOT transcription complex subunit 8 isoform X1.
   
 0.992
Cnot6l
CCR4-NOT transcription complex subunit 6-like.
   
 0.984
Cnot6
CCR4-NOT transcription complex subunit 6 isoform X1.
   
 0.979
Cnot9
Cell differentiation protein RCD1 homolog isoform X1.
    
 0.979
Your Current Organism:
Dipodomys ordii
NCBI taxonomy Id: 10020
Other names: D. ordii
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