STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slfnl1Schlafen-like protein 1. (408 aa)    
Predicted Functional Partners:
Rtcb
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
   
 0.945
Rtraf
UPF0568 protein C14orf166 homolog.
   
 0.878
ENSDORP00000022830
annotation not available
   
 0.878
Fam98a
Protein FAM98A.
   
 
 0.810
Fam98c
Protein FAM98C.
   
 
 0.810
Tmco2
Transmembrane and coiled-coil domain-containing protein 2.
   
    0.726
Hectd4
Probable E3 ubiquitin-protein ligase HECTD4 isoform X2.
    
 
 0.704
Fam166a
Protein FAM166A.
   
    0.661
Spns2
Protein spinster homolog 2.
    
 0.632
Slc2a12
Solute carrier family 2, facilitated glucose transporter member 12; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
    
 0.632
Your Current Organism:
Dipodomys ordii
NCBI taxonomy Id: 10020
Other names: D. ordii
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