Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Cox18 | Dtymk | ENSDORP00000014740 | ENSDORP00000015619 | Mitochondrial inner membrane protein COX18 isoform X1. | Thymidylate kinase. | 0.601 |
Cox18 | Tatdn1 | ENSDORP00000014740 | ENSDORP00000008029 | Mitochondrial inner membrane protein COX18 isoform X1. | Putative deoxyribonuclease TATDN1. | 0.485 |
Cox18 | Yars | ENSDORP00000014740 | ENSDORP00000011160 | Mitochondrial inner membrane protein COX18 isoform X1. | Tyrosine--tRNA ligase. | 0.725 |
Dtymk | Cox18 | ENSDORP00000015619 | ENSDORP00000014740 | Thymidylate kinase. | Mitochondrial inner membrane protein COX18 isoform X1. | 0.601 |
Dtymk | Endov | ENSDORP00000015619 | ENSDORP00000021587 | Thymidylate kinase. | Endonuclease V. | 0.498 |
Dtymk | Fen1 | ENSDORP00000015619 | ENSDORP00000001909 | Thymidylate kinase. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.682 |
Dtymk | Tatdn1 | ENSDORP00000015619 | ENSDORP00000008029 | Thymidylate kinase. | Putative deoxyribonuclease TATDN1. | 0.416 |
Dtymk | Urod | ENSDORP00000015619 | ENSDORP00000019282 | Thymidylate kinase. | Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. | 0.498 |
Eif3e | Tatdn1 | ENSDORP00000013263 | ENSDORP00000008029 | Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF- 2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribos [...] | Putative deoxyribonuclease TATDN1. | 0.702 |
Eif3e | Yars | ENSDORP00000013263 | ENSDORP00000011160 | Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF- 2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribos [...] | Tyrosine--tRNA ligase. | 0.588 |
Endov | Dtymk | ENSDORP00000021587 | ENSDORP00000015619 | Endonuclease V. | Thymidylate kinase. | 0.498 |
Endov | Tatdn1 | ENSDORP00000021587 | ENSDORP00000008029 | Endonuclease V. | Putative deoxyribonuclease TATDN1. | 0.479 |
Endov | Yars | ENSDORP00000021587 | ENSDORP00000011160 | Endonuclease V. | Tyrosine--tRNA ligase. | 0.575 |
Exosc5 | Fen1 | ENSDORP00000003375 | ENSDORP00000001909 | Exosome complex component RRP46. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.553 |
Exosc5 | Tatdn1 | ENSDORP00000003375 | ENSDORP00000008029 | Exosome complex component RRP46. | Putative deoxyribonuclease TATDN1. | 0.442 |
Fen1 | Dtymk | ENSDORP00000001909 | ENSDORP00000015619 | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | Thymidylate kinase. | 0.682 |
Fen1 | Exosc5 | ENSDORP00000001909 | ENSDORP00000003375 | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | Exosome complex component RRP46. | 0.553 |
Fen1 | Ssbp1 | ENSDORP00000001909 | ENSDORP00000019817 | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | Single-stranded DNA-binding protein, mitochondrial. | 0.447 |
Fen1 | Tatdn1 | ENSDORP00000001909 | ENSDORP00000008029 | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | Putative deoxyribonuclease TATDN1. | 0.414 |
Fen1 | Yars | ENSDORP00000001909 | ENSDORP00000011160 | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | Tyrosine--tRNA ligase. | 0.658 |
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