STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rnf216E3 ubiquitin-protein ligase RNF216. (892 aa)    
Predicted Functional Partners:
Uba52
ubiquitin-60S ribosomal protein L40.
    
  0.947
LOC105986631
Ubiquitin-like.
    
  0.911
Rps27a
ubiquitin-40S ribosomal protein S27a.
    
 0.852
ENSDORP00000019733
annotation not available
    
 0.852
LOC105993014
ubiquitin-40S ribosomal protein S27a pseudogene.
    
 0.852
Ubc
polyubiquitin-C.
   
 0.848
Ubb
polyubiquitin-B.
   
 0.848
Tnf
Tumor necrosis factor isoform X1; Belongs to the tumor necrosis factor family.
    
 0.836
Birc6
Baculoviral IAP repeat-containing protein 6.
    
 0.794
Ripk1
Receptor-interacting serine/threonine-protein kinase 1.
    
 0.790
Your Current Organism:
Dipodomys ordii
NCBI taxonomy Id: 10020
Other names: D. ordii
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.