STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmp272 kDa type IV collagenase. (126 aa)    
Predicted Functional Partners:
Timp2
Metalloproteinase inhibitor 2.
   
 0.980
Timp3
Metalloproteinase inhibitor 3.
   
 0.970
Mmp14
Matrix metalloproteinase-14.
  
0.945
Thbs1
Thrombospondin-1.
    
 0.922
Timp1
Metalloproteinase inhibitor 1.
   
 0.889
Mmp1
Interstitial collagenase.
   
 
0.882
Edn1
Endothelin-1-like isoform X1.
     
 0.878
Cybb
Cytochrome b-245 heavy chain.
   
 
 0.875
Mmp7
Matrilysin.
 
 
 0.874
Hbegf
Proheparin-binding EGF-like growth factor.
    
 0.871
Your Current Organism:
Dipodomys ordii
NCBI taxonomy Id: 10020
Other names: D. ordii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.