STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpsf3Cleavage and polyadenylation specificity factor subunit 3. (651 aa)    
Predicted Functional Partners:
Cpsf4
Cleavage and polyadenylation specificity factor subunit 4.
   
 0.999
Fip1l1
pre-mRNA 3'-end-processing factor FIP1.
    
 0.999
Cpsf1
Cleavage and polyadenylation specificity factor subunit 1.
   
 0.999
Sympk
Symplekin.
   
 0.999
Rbbp6
E3 ubiquitin-protein ligase RBBP6 isoform X1.
    
 0.999
Cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
0.999
Wdr33
pre-mRNA 3' end processing protein WDR33 isoform X1.
   
 0.999
Wdr82
WD repeat-containing protein 82.
   
 0.998
Ssu72
RNA polymerase II subunit A C-terminal domain phosphatase SSU72.
   
 0.994
Pcf11
pre-mRNA cleavage complex 2 protein Pcf11 isoform X3.
    
 0.992
Your Current Organism:
Dipodomys ordii
NCBI taxonomy Id: 10020
Other names: D. ordii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.