STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smug1Single-strand selective monofunctional uracil DNA glycosylase. (272 aa)    
Predicted Functional Partners:
Adat3
Probable inactive tRNA-specific adenosine deaminase-like protein 3.
   
 0.981
Tyms
Thymidylate synthase.
  
 
 0.902
Uprt
Uracil phosphoribosyltransferase homolog.
   
 0.869
Tk1
Thymidine kinase.
    
 0.848
Ndufa4l2
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2.
  
 
 0.841
Rbks
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
    
 0.834
Dtymk
Thymidylate kinase.
    
 0.811
Pnp
Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
    
 0.798
Nt5el
5'-nucleotidase-like; Belongs to the 5'-nucleotidase family.
    
 0.775
Nt5e
5'-nucleotidase; Belongs to the 5'-nucleotidase family.
    
 0.775
Your Current Organism:
Dipodomys ordii
NCBI taxonomy Id: 10020
Other names: D. ordii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.