STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lemd3Inner nuclear membrane protein Man1 isoform X1. (925 aa)    
Predicted Functional Partners:
Smad2
Mothers against decapentaplegic homolog.
    
 
 0.951
Smad3
Mothers against decapentaplegic homolog.
    
 
 0.935
Smad1
Mothers against decapentaplegic homolog.
    
 
 0.931
Banf1
Barrier-to-autointegration factor.
   
 0.909
Cdc5l
Cell division cycle 5-like protein.
   
 
 0.906
Lmna
Lamin; Belongs to the intermediate filament family.
    
 0.889
Banf2
Barrier-to-autointegration factor-like protein.
   
 0.882
Des
Desmin; Belongs to the intermediate filament family.
    
 0.860
Lmnb1
lamin-B1; Belongs to the intermediate filament family.
    
 0.860
Lmnb2
lamin-B2; Belongs to the intermediate filament family.
    
 0.860
Your Current Organism:
Dipodomys ordii
NCBI taxonomy Id: 10020
Other names: D. ordii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.