STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106000021Histone H2A type 1. (130 aa)    
Predicted Functional Partners:
Mysm1
Histone H2A deubiquitinase MYSM1.
    
 0.996
Kdm6b
Lysine-specific demethylase 6B isoform X2.
    
 0.839
Kdm6a
Lysine-specific demethylase 6A.
    
 0.839
Polr2b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.798
Polr2c
DNA-directed RNA polymerase II subunit RPB3.
    
 0.796
Trp53bp1
Tumor suppressor p53-binding protein 1 isoform X1.
    
 0.793
Polr2e
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
  0.789
Polr2k
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
    
  0.785
Polr2h
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
  0.785
Polr2d
DNA-directed RNA polymerase II subunit RPB4.
    
  0.784
Your Current Organism:
Dipodomys ordii
NCBI taxonomy Id: 10020
Other names: D. ordii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.