STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEV99206.1Vancomycin resistance protein YoaR, contains peptidoglycan-binding and VanW domains. (588 aa)    
Predicted Functional Partners:
SEV99182.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family; Manually curated.
 
     0.844
mshB
N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase; Belongs to the MshB deacetylase family.
       0.810
dapC
Succinyldiaminopimelate aminotransferase apoenzyme; Manually curated.
       0.635
SEV99234.1
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.585
SEW37899.1
beta-N-acetylhexosaminidase.
     
 0.496
SEW30891.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
     0.470
hppA-2
K(+)-stimulated pyrophosphate-energized sodium pump; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.
       0.458
Your Current Organism:
Austwickia chelonae
NCBI taxonomy Id: 100225
Other names: A. chelonae, ATCC 51576, CCUG 47447, DSM 44178, Dermatophilus chelonae, JCM 9706, NBRC 105200, strain W16
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