STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW03789.1Zn-dependent protease (includes SpoIVFB). (415 aa)    
Predicted Functional Partners:
SEW03816.1
tRNA (adenine57-N1/adenine58-N1)-methyltransferase; Manually curated.
      0.917
arc
Proteasome-associated ATPase.
 
    0.800
SEW03866.1
Peptidyl-tRNA hydrolase.
       0.752
SEW34972.1
MFS transporter, NNP family, nitrate/nitrite transporter.
  
    0.698
SEW03505.1
Hypothetical protein.
  
     0.694
SEW03762.1
Putative RecB family exonuclease; Manually curated.
       0.691
SEV93182.1
Tagatose 6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
  
    0.666
fruK
Fructose-1-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
  
    0.666
SEW42918.1
Tagatose 6-phosphate kinase.
  
    0.666
SEW13812.1
Hypothetical protein.
  
     0.536
Your Current Organism:
Austwickia chelonae
NCBI taxonomy Id: 100225
Other names: A. chelonae, ATCC 51576, CCUG 47447, DSM 44178, Dermatophilus chelonae, JCM 9706, NBRC 105200, strain W16
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