rpmE protein (Austwickia chelonae) - STRING interaction network

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second shell of interactors

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Predicted Interactions

gene neighborhood

gene fusions

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textmining

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Score

rpmE

LSU ribosomal protein L31P; Binds the 23S rRNA. (71 aa)

Predicted Functional Partners:

rplR

0.995

rpsF

0.995

rpmG

0.992

SEV97049.1

0.992

rplT

0.992

rpmB

0.992

rpsT

0.991

rplU

0.991

rplS

0.991

rpsP

0.991

Your Current Organism:

Austwickia chelonae

NCBI taxonomy Id: 100225
Other names: A. chelonae, ATCC 51576, CCUG 47447, DSM 44178, Dermatophilus chelonae, JCM 9706, NBRC 105200, strain W16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEV97049.1	rplR	SAMN05421595_0644	SAMN05421595_0636	LSU ribosomal protein L36P; Manually curated.	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
SEV97049.1	rplS	SAMN05421595_0644	SAMN05421595_1693	LSU ribosomal protein L36P; Manually curated.	Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.994
SEV97049.1	rplT	SAMN05421595_0644	SAMN05421595_1580	LSU ribosomal protein L36P; Manually curated.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.994
SEV97049.1	rplU	SAMN05421595_0644	SAMN05421595_1630	LSU ribosomal protein L36P; Manually curated.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.994
SEV97049.1	rpmB	SAMN05421595_0644	SAMN05421595_1724	LSU ribosomal protein L36P; Manually curated.	Large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.993
SEV97049.1	rpmE	SAMN05421595_0644	SAMN05421595_1860	LSU ribosomal protein L36P; Manually curated.	LSU ribosomal protein L31P; Binds the 23S rRNA.	0.992
SEV97049.1	rpmG	SAMN05421595_0644	SAMN05421595_0601	LSU ribosomal protein L36P; Manually curated.	LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family.	0.993
SEV97049.1	rpsF	SAMN05421595_0644	SAMN05421595_2903	LSU ribosomal protein L36P; Manually curated.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.998
SEV97049.1	rpsP	SAMN05421595_0644	SAMN05421595_1698	LSU ribosomal protein L36P; Manually curated.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.995
SEV97049.1	rpsT	SAMN05421595_0644	SAMN05421595_1160	LSU ribosomal protein L36P; Manually curated.	SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.	0.986
rplR	SEV97049.1	SAMN05421595_0636	SAMN05421595_0644	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	LSU ribosomal protein L36P; Manually curated.	0.999
rplR	rplS	SAMN05421595_0636	SAMN05421595_1693	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.999
rplR	rplT	SAMN05421595_0636	SAMN05421595_1580	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
rplR	rplU	SAMN05421595_0636	SAMN05421595_1630	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
rplR	rpmB	SAMN05421595_0636	SAMN05421595_1724	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	Large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.998
rplR	rpmE	SAMN05421595_0636	SAMN05421595_1860	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	LSU ribosomal protein L31P; Binds the 23S rRNA.	0.995
rplR	rpmG	SAMN05421595_0636	SAMN05421595_0601	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family.	0.998
rplR	rpsF	SAMN05421595_0636	SAMN05421595_2903	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.998
rplR	rpsP	SAMN05421595_0636	SAMN05421595_1698	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.993
rplR	rpsT	SAMN05421595_0636	SAMN05421595_1160	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.	0.976