STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW29936.1LssY C-terminus. (467 aa)    
Predicted Functional Partners:
rplF
Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.727
SEW37193.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
   
 0.611
menE
O-succinylbenzoic acid--CoA ligase.
    
  0.585
SEV92871.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
  0.585
SEW11044.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
    
  0.585
menE-2
O-succinylbenzoic acid--CoA ligase.
    
  0.585
SEW02816.1
Superfamily II DNA or RNA helicase.
  
 
   0.503
SEW37327.1
Hypothetical protein.
  
 
  0.495
SEV91322.1
NUDIX domain-containing protein; Belongs to the Nudix hydrolase family.
  
    0.414
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
 
 
 0.403
Your Current Organism:
Austwickia chelonae
NCBI taxonomy Id: 100225
Other names: A. chelonae, ATCC 51576, CCUG 47447, DSM 44178, Dermatophilus chelonae, JCM 9706, NBRC 105200, strain W16
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