Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SCO1381 | SCO5055 | gene:17758964 | gene:17762704 | SC1A8A.01c, partial CDS, hypothetical protein, len: >183aa; similar to SW:Q50603 (Y0DD_MYCTU) hypothetical protein from Mycobacterium tuberculosis (225 aa) fasta scores; opt: 641, z-score: 633.8, E(): 7.1e-28, 64.7% identity in 150 aa overlap. Note possible alternative translational start sites downstream; SC10A9.23c, conserved hypothetical protein (fragment), len: >78 aa; similar to SW:YI30_MYCTU (EMBL:Z78020) Mycobacterium tuberculosis hypothetical 24.0 kDa protein MTCY1A11.13c, 225 aa; fasta scores: opt: 269 z-score: 377.2 E(): 1.4e-13; 56.0% identity in 75 aa overlap. | Putative exoribonuclease; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.691 |
| SCO1381 | SCO5240 | gene:17758964 | gene:17762891 | SC1A8A.01c, partial CDS, hypothetical protein, len: >183aa; similar to SW:Q50603 (Y0DD_MYCTU) hypothetical protein from Mycobacterium tuberculosis (225 aa) fasta scores; opt: 641, z-score: 633.8, E(): 7.1e-28, 64.7% identity in 150 aa overlap. Note possible alternative translational start sites downstream; SC10A9.23c, conserved hypothetical protein (fragment), len: >78 aa; similar to SW:YI30_MYCTU (EMBL:Z78020) Mycobacterium tuberculosis hypothetical 24.0 kDa protein MTCY1A11.13c, 225 aa; fasta scores: opt: 269 z-score: 377.2 E(): 1.4e-13; 56.0% identity in 75 aa overlap. | Hypothetical protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.771 |
| SCO1381 | SCO5388 | gene:17758964 | gene:17763040 | SC1A8A.01c, partial CDS, hypothetical protein, len: >183aa; similar to SW:Q50603 (Y0DD_MYCTU) hypothetical protein from Mycobacterium tuberculosis (225 aa) fasta scores; opt: 641, z-score: 633.8, E(): 7.1e-28, 64.7% identity in 150 aa overlap. Note possible alternative translational start sites downstream; SC10A9.23c, conserved hypothetical protein (fragment), len: >78 aa; similar to SW:YI30_MYCTU (EMBL:Z78020) Mycobacterium tuberculosis hypothetical 24.0 kDa protein MTCY1A11.13c, 225 aa; fasta scores: opt: 269 z-score: 377.2 E(): 1.4e-13; 56.0% identity in 75 aa overlap. | Conserved hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | 0.742 |
| SCO1381 | SCO6715 | gene:17758964 | gene:17764373 | SC1A8A.01c, partial CDS, hypothetical protein, len: >183aa; similar to SW:Q50603 (Y0DD_MYCTU) hypothetical protein from Mycobacterium tuberculosis (225 aa) fasta scores; opt: 641, z-score: 633.8, E(): 7.1e-28, 64.7% identity in 150 aa overlap. Note possible alternative translational start sites downstream; SC10A9.23c, conserved hypothetical protein (fragment), len: >78 aa; similar to SW:YI30_MYCTU (EMBL:Z78020) Mycobacterium tuberculosis hypothetical 24.0 kDa protein MTCY1A11.13c, 225 aa; fasta scores: opt: 269 z-score: 377.2 E(): 1.4e-13; 56.0% identity in 75 aa overlap. | Putative transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.837 |
| SCO1381 | SCO7106 | gene:17758964 | gene:17764766 | SC1A8A.01c, partial CDS, hypothetical protein, len: >183aa; similar to SW:Q50603 (Y0DD_MYCTU) hypothetical protein from Mycobacterium tuberculosis (225 aa) fasta scores; opt: 641, z-score: 633.8, E(): 7.1e-28, 64.7% identity in 150 aa overlap. Note possible alternative translational start sites downstream; SC10A9.23c, conserved hypothetical protein (fragment), len: >78 aa; similar to SW:YI30_MYCTU (EMBL:Z78020) Mycobacterium tuberculosis hypothetical 24.0 kDa protein MTCY1A11.13c, 225 aa; fasta scores: opt: 269 z-score: 377.2 E(): 1.4e-13; 56.0% identity in 75 aa overlap. | Conserved hypothetical protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.772 |
| SCO1381 | SCO7306 | gene:17758964 | gene:17764966 | SC1A8A.01c, partial CDS, hypothetical protein, len: >183aa; similar to SW:Q50603 (Y0DD_MYCTU) hypothetical protein from Mycobacterium tuberculosis (225 aa) fasta scores; opt: 641, z-score: 633.8, E(): 7.1e-28, 64.7% identity in 150 aa overlap. Note possible alternative translational start sites downstream; SC10A9.23c, conserved hypothetical protein (fragment), len: >78 aa; similar to SW:YI30_MYCTU (EMBL:Z78020) Mycobacterium tuberculosis hypothetical 24.0 kDa protein MTCY1A11.13c, 225 aa; fasta scores: opt: 269 z-score: 377.2 E(): 1.4e-13; 56.0% identity in 75 aa overlap. | Regulatory protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.770 |
| SCO1381 | SCP1.95 | gene:17758964 | gene:17765600 | SC1A8A.01c, partial CDS, hypothetical protein, len: >183aa; similar to SW:Q50603 (Y0DD_MYCTU) hypothetical protein from Mycobacterium tuberculosis (225 aa) fasta scores; opt: 641, z-score: 633.8, E(): 7.1e-28, 64.7% identity in 150 aa overlap. Note possible alternative translational start sites downstream; SC10A9.23c, conserved hypothetical protein (fragment), len: >78 aa; similar to SW:YI30_MYCTU (EMBL:Z78020) Mycobacterium tuberculosis hypothetical 24.0 kDa protein MTCY1A11.13c, 225 aa; fasta scores: opt: 269 z-score: 377.2 E(): 1.4e-13; 56.0% identity in 75 aa overlap. | Putative regulatory protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.771 |
| SCO3878 | SCO5055 | gene:17761505 | gene:17762704 | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | Putative exoribonuclease; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.479 |
| SCO3878 | SCO5240 | gene:17761505 | gene:17762891 | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | Hypothetical protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.488 |
| SCO3878 | SCO5388 | gene:17761505 | gene:17763040 | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | Conserved hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | 0.795 |
| SCO3878 | dnaE | gene:17761505 | gene:17765731 | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | SCP1.224c, dnaE, probable DNA polymerase III, alpha chain (EC 2.7.7.7), len: 1213aa; similar to many eg. SW:Q10779 (DP3A_MYCTU) probable DNA polymerase III, alpha chain from Mycobacterium tuberculosis (1184 aa) fasta scores; opt: 3067, z-score: 3382.7, E(): 0, 55.8% identity in 1200 aa overlap and SW:P10443 (DP3A_ECOLI) DNA polymerase III, alpha chain (EC 2.7.7.7) from Escherichia coli (1160 aa) fasta scores; opt: 845, z-score: 927.5, E(): 0, 36.2% identity in 1178 aa overlap. Contains Pfam match to entry PF02231 PHP_N, PHP domain N-terminal region. | 0.991 |
| SCO5055 | SCO1381 | gene:17762704 | gene:17758964 | Putative exoribonuclease; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | SC1A8A.01c, partial CDS, hypothetical protein, len: >183aa; similar to SW:Q50603 (Y0DD_MYCTU) hypothetical protein from Mycobacterium tuberculosis (225 aa) fasta scores; opt: 641, z-score: 633.8, E(): 7.1e-28, 64.7% identity in 150 aa overlap. Note possible alternative translational start sites downstream; SC10A9.23c, conserved hypothetical protein (fragment), len: >78 aa; similar to SW:YI30_MYCTU (EMBL:Z78020) Mycobacterium tuberculosis hypothetical 24.0 kDa protein MTCY1A11.13c, 225 aa; fasta scores: opt: 269 z-score: 377.2 E(): 1.4e-13; 56.0% identity in 75 aa overlap. | 0.691 |
| SCO5055 | SCO3878 | gene:17762704 | gene:17761505 | Putative exoribonuclease; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | 0.479 |
| SCO5055 | SCO5240 | gene:17762704 | gene:17762891 | Putative exoribonuclease; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | Hypothetical protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.650 |
| SCO5055 | SCO5388 | gene:17762704 | gene:17763040 | Putative exoribonuclease; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | Conserved hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | 0.737 |
| SCO5055 | SCO6715 | gene:17762704 | gene:17764373 | Putative exoribonuclease; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | Putative transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.495 |
| SCO5055 | SCO7106 | gene:17762704 | gene:17764766 | Putative exoribonuclease; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | Conserved hypothetical protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.602 |
| SCO5055 | SCO7306 | gene:17762704 | gene:17764966 | Putative exoribonuclease; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | Regulatory protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.536 |
| SCO5055 | SCP1.95 | gene:17762704 | gene:17765600 | Putative exoribonuclease; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | Putative regulatory protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.590 |
| SCO5240 | SCO1381 | gene:17762891 | gene:17758964 | Hypothetical protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | SC1A8A.01c, partial CDS, hypothetical protein, len: >183aa; similar to SW:Q50603 (Y0DD_MYCTU) hypothetical protein from Mycobacterium tuberculosis (225 aa) fasta scores; opt: 641, z-score: 633.8, E(): 7.1e-28, 64.7% identity in 150 aa overlap. Note possible alternative translational start sites downstream; SC10A9.23c, conserved hypothetical protein (fragment), len: >78 aa; similar to SW:YI30_MYCTU (EMBL:Z78020) Mycobacterium tuberculosis hypothetical 24.0 kDa protein MTCY1A11.13c, 225 aa; fasta scores: opt: 269 z-score: 377.2 E(): 1.4e-13; 56.0% identity in 75 aa overlap. | 0.771 |
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