STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCO2859Conserved hypothetical protein SCE20.33c; SCE20.33c, unknown, len: 125 aa. Similar several other proteins of unknown function e.g. from Lactococcus lactis TR:O87247(EMBL:AE001272) conserved hypothetical protein (114 aa), fasta scores opt: 226 z-score: 311.1 E(): 6e-10 35.1% identity in 94 aa overlap. (125 aa)    
Predicted Functional Partners:
SCO2858
Hypothetical protein SCE20.32c; SCE20.32c, unknown, len: 85 aa.
  
    0.828
SCO2857
Putative membrane protein; SCE20.31c, possible membrane protein, len: 114 aa. Contains possible membrane spanning hydrophobic domains and an N-terminal signal sequence.
  
    0.808
SCO2860
SCE20.34c, arr, rifampin ADP-ribosyl transferase, len 136 aa. Highly similar to Mycobacterium smegmatis TR:O67972 (EMBL:AF001493) rifampin ADP-ribosyl transferase (143 aa), fasta scores opt: 487 z-score: 611.8 E(): 1.1e-26 53.0% identity in 134 aa overlap and Pseudomonas aeruginosa TR:O87490 (EMBL:AF078527) ribosylating transferase ARR-2 (150 aa), fasta scores opt: 429 z-score: 540.3 E(): 1e-22 50.0% identity in 128 aa overlap.
       0.462
Your Current Organism:
Streptomyces coelicolor
NCBI taxonomy Id: 100226
Other names: S. coelicolor A3(2), Streptomyces coelicolor A3(2)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.