STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCO4522Hypothetical protein SCD35.29c; SCD35.29c, unknown, len: 158 aa. (158 aa)    
Predicted Functional Partners:
SCO4521
SCD35.28c, possible secreted protein, len: 361 aa; similar to TR:Q9F3F6 (EMBL:AL392175) Streptomyces coelicolor putative secreted protein 2SCD4.18, 355 aa; fasta scores: opt: 942 Z-score: 1049.8 E(): 7.7e-51; 43.296% identity. Contains possible N-terminal region signal peptide sequence.
       0.812
SCO4520
SCD35.27c, hypothetical protein, len: 101 aa; similar to TR:Q9KYA2 (EMBL:AL356813) Streptomyces coelicolor conserved hypothetical protein SCK15.02, 102 aa; fasta scores: opt: 471 Z-score: 568.2 E(): 5.2e-24; 73.684% identity in 95 aa overlap.
       0.709
SCO4523
SCD35.30, possible integral membrane protein, len: 197 aa. Contains possible hydrophobic membrane spanning regions.
       0.454
Your Current Organism:
Streptomyces coelicolor
NCBI taxonomy Id: 100226
Other names: S. coelicolor A3(2), Streptomyces coelicolor A3(2)
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