STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCO4524SCD35.31, putative membrane protein, len: 239 aa. Contains possible hydrophobic membrane spanning region. (239 aa)    
Predicted Functional Partners:
SCO4525
Hypothetical protein SCD35.32; SCD35.32, unknown, len: 293 aa. Contains match to Prosite entry PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature.
 
  
 0.977
SCO4527
SCD35.34, possible integral membrane protein, len: 345 aa. Contains possible hydrophobic membrane spanning regions.
 
    0.967
SCO4528
SCD35.35, possible integral membrane protein, len: 302 aa. Contains possible hydrophobic membrane spanning regions.
 
    0.966
SCO4530
2SCD4.01, possible membrane protein (fragment), len: >147 aa. Contains possible hydrophobic membrane spanning region; SCD35.37, unknown, len: >77 aa.
 
    0.922
SCO4531
2SCD4.02, possible septum determining protein, len: 145 aa; similar to TR:CAB92601 (EMBL:AL356813) Streptomyces coelicolor putative septum determining protein MinD3, 131 aa; fasta scores: opt: 115 z-score: 155.7 E(): 0.33; 30.7% identity in 137 aa overlap. Contains possible hydrophobic membrane spanning region.
 
    0.910
SCO4526
SCD35.33, possible protein kinase, len: 435 aa; similar to TR:P94647 (EMBL:U77780) Chlorobium limicola secretory protein kinase Kbh, 474 aa; fasta scores: opt: 722 z-score: 805.0 E(): 0; 35.9% identity in 368 aa overlap. Contains match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop).
 
    0.906
SCO3208
SCE8.01, possible secreted protein, len: 432 aa; similar to TR:CAC44281 (EMBL:AL596030) Streptomyces coelicolor hypothetical protein SCBAC17F8.09, 436 aa; fasta scores: opt: 555 Z-score: 578.7 E(): 1.3e-24; 33.991% identity in 456 aa overlap. Contains a possible N-terminal signal sequence.
 
  
 0.870
SCP1.173
SCP1.173, possible membrane protein, len: 139aa; contains a possible membrane-spanning hydrophobic region.
 
    0.861
SCO4548
Putative integral membrane protein; SCD16A.35c, partial CDS, unknown, len: >726 aa; 2SCD4.19, possible integral membrane protein (fragment), len: >309 aa. Contains possible hydrophobic membrane spanning regions.
 
     0.799
SCP1.174
SCP1.174, possible membrane protein, len: 147aa; similar to TR:Q9KY94 (EMBL:AL356813) putative septum site-determining protein from Streptomyces coelicolor (131 aa) fasta scores; opt: 129, z-score: 161.9, E(): 0.15, 33.3% identity in 141 aa overlap. Contains a possible membrane-spanning hydrophobic region.
 
    0.791
Your Current Organism:
Streptomyces coelicolor
NCBI taxonomy Id: 100226
Other names: S. coelicolor A3(2), Streptomyces coelicolor A3(2)
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