node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCO1758 | SCO5567 | gene:17759352 | gene:17763225 | Putative GTP binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | SC7A1.11, possible DNA methylase, len: 195aa; similar to many hypotheticals some of which contain PS00092 N-6 Adenine-specific DNA methylases signature eg. SW:YHHF_ECOLI hypothetical protein from Escherichia coli (198 aa) fasta scores; opt: 340, z-score: 430.7, E(): 1.1e-16, (35.8% identity in 193 aa overlap). Contains PS00092 N-6 Adenine-specific DNA methylases signature although not in the expected N-terminal region. | 0.672 |
SCO1758 | SCO5568 | gene:17759352 | gene:17763226 | Putative GTP binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.478 |
SCO3882 | SCO5567 | gene:17761509 | gene:17763225 | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | SC7A1.11, possible DNA methylase, len: 195aa; similar to many hypotheticals some of which contain PS00092 N-6 Adenine-specific DNA methylases signature eg. SW:YHHF_ECOLI hypothetical protein from Escherichia coli (198 aa) fasta scores; opt: 340, z-score: 430.7, E(): 1.1e-16, (35.8% identity in 193 aa overlap). Contains PS00092 N-6 Adenine-specific DNA methylases signature although not in the expected N-terminal region. | 0.681 |
SCO3882 | SCO5571 | gene:17761509 | gene:17763229 | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | SC7A1.15, rpmF, 50S ribosomal protein L32, len: 57 aa; similar to many eg. SW:RL32_BACST 50S PrmF, ribosomal protein L32 from Bacillus stearothermophilus (56 aa) fasta scores; opt: 180, z-score: 341.1, E(): 1.1e-11, (48.1% identity in 54 aa overlap). | 0.556 |
SCO5564 | SCO5565 | gene:17763222 | gene:17763223 | SC7A1.08c, rpmB, 50S ribosomal protein L28, len: 61aa; similar to many including SW:RL28_BACSU RpmB 50S ribosomal protein L28 from Bacillus subtilis (62 aa) fasta scores; opt: 171, z-score: 301.8, E(): 1.6e-09, (41.0% identity in 61 aa overlap). Contains Pfam match to entry PF00830 Ribosomal_L28, Ribosomal L28 family, score 74.50, E-value 2.2e-18; Belongs to the bacterial ribosomal protein bL28 family. | SC7A1.09, unknown, len: 589 aa; similar to several hypothetical proteins eg.TR:O34751 (EMBL:Z99112) YLOV protein from Bacillus subtilis (553 aa) fasta scores; opt: 656, z-score: 464.3, E(): 1.4e-18, (28.9% identity in 582 aa overlap) and to TR:AAK47378 (EMBL:AE007126) Mycobacterium tuberculosis CDC1551 hypothetical protein MT3052, 470 aa; fasta scores: opt: 772 Z-score: 726.0 E(): 8.3e-33; 40.974% identity in 493 aa overlap. | 0.747 |
SCO5564 | SCO5566 | gene:17763222 | gene:17763224 | SC7A1.08c, rpmB, 50S ribosomal protein L28, len: 61aa; similar to many including SW:RL28_BACSU RpmB 50S ribosomal protein L28 from Bacillus subtilis (62 aa) fasta scores; opt: 171, z-score: 301.8, E(): 1.6e-09, (41.0% identity in 61 aa overlap). Contains Pfam match to entry PF00830 Ribosomal_L28, Ribosomal L28 family, score 74.50, E-value 2.2e-18; Belongs to the bacterial ribosomal protein bL28 family. | Putative ATP-dependent DNA helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.730 |
SCO5564 | SCO5567 | gene:17763222 | gene:17763225 | SC7A1.08c, rpmB, 50S ribosomal protein L28, len: 61aa; similar to many including SW:RL28_BACSU RpmB 50S ribosomal protein L28 from Bacillus subtilis (62 aa) fasta scores; opt: 171, z-score: 301.8, E(): 1.6e-09, (41.0% identity in 61 aa overlap). Contains Pfam match to entry PF00830 Ribosomal_L28, Ribosomal L28 family, score 74.50, E-value 2.2e-18; Belongs to the bacterial ribosomal protein bL28 family. | SC7A1.11, possible DNA methylase, len: 195aa; similar to many hypotheticals some of which contain PS00092 N-6 Adenine-specific DNA methylases signature eg. SW:YHHF_ECOLI hypothetical protein from Escherichia coli (198 aa) fasta scores; opt: 340, z-score: 430.7, E(): 1.1e-16, (35.8% identity in 193 aa overlap). Contains PS00092 N-6 Adenine-specific DNA methylases signature although not in the expected N-terminal region. | 0.698 |
SCO5564 | SCO5568 | gene:17763222 | gene:17763226 | SC7A1.08c, rpmB, 50S ribosomal protein L28, len: 61aa; similar to many including SW:RL28_BACSU RpmB 50S ribosomal protein L28 from Bacillus subtilis (62 aa) fasta scores; opt: 171, z-score: 301.8, E(): 1.6e-09, (41.0% identity in 61 aa overlap). Contains Pfam match to entry PF00830 Ribosomal_L28, Ribosomal L28 family, score 74.50, E-value 2.2e-18; Belongs to the bacterial ribosomal protein bL28 family. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.664 |
SCO5564 | SCO5570 | gene:17763222 | gene:17763228 | SC7A1.08c, rpmB, 50S ribosomal protein L28, len: 61aa; similar to many including SW:RL28_BACSU RpmB 50S ribosomal protein L28 from Bacillus subtilis (62 aa) fasta scores; opt: 171, z-score: 301.8, E(): 1.6e-09, (41.0% identity in 61 aa overlap). Contains Pfam match to entry PF00830 Ribosomal_L28, Ribosomal L28 family, score 74.50, E-value 2.2e-18; Belongs to the bacterial ribosomal protein bL28 family. | Hypothetical protein; SC7A1.14, unknown, len: 217 aa; similar to Y06F_MYCTU hypothetical protein from Mycobacterium tuberculosis (207 aa) fasta scores; opt: 244, z-score: 699.9, E(): 1.1e-31, (45.5% identity in 189 aa overlap). | 0.958 |
SCO5564 | SCO5571 | gene:17763222 | gene:17763229 | SC7A1.08c, rpmB, 50S ribosomal protein L28, len: 61aa; similar to many including SW:RL28_BACSU RpmB 50S ribosomal protein L28 from Bacillus subtilis (62 aa) fasta scores; opt: 171, z-score: 301.8, E(): 1.6e-09, (41.0% identity in 61 aa overlap). Contains Pfam match to entry PF00830 Ribosomal_L28, Ribosomal L28 family, score 74.50, E-value 2.2e-18; Belongs to the bacterial ribosomal protein bL28 family. | SC7A1.15, rpmF, 50S ribosomal protein L32, len: 57 aa; similar to many eg. SW:RL32_BACST 50S PrmF, ribosomal protein L32 from Bacillus stearothermophilus (56 aa) fasta scores; opt: 180, z-score: 341.1, E(): 1.1e-11, (48.1% identity in 54 aa overlap). | 0.997 |
SCO5564 | SCO5572 | gene:17763222 | gene:17763230 | SC7A1.08c, rpmB, 50S ribosomal protein L28, len: 61aa; similar to many including SW:RL28_BACSU RpmB 50S ribosomal protein L28 from Bacillus subtilis (62 aa) fasta scores; opt: 171, z-score: 301.8, E(): 1.6e-09, (41.0% identity in 61 aa overlap). Contains Pfam match to entry PF00830 Ribosomal_L28, Ribosomal L28 family, score 74.50, E-value 2.2e-18; Belongs to the bacterial ribosomal protein bL28 family. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. May modulate key aspects of gene expression as its absence has extensive effects on the abundance of about 200 different transcripts. Probably processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. Belongs to the ribonuclease III family. | 0.946 |
SCO5564 | SCO5573 | gene:17763222 | gene:17763231 | SC7A1.08c, rpmB, 50S ribosomal protein L28, len: 61aa; similar to many including SW:RL28_BACSU RpmB 50S ribosomal protein L28 from Bacillus subtilis (62 aa) fasta scores; opt: 171, z-score: 301.8, E(): 1.6e-09, (41.0% identity in 61 aa overlap). Contains Pfam match to entry PF00830 Ribosomal_L28, Ribosomal L28 family, score 74.50, E-value 2.2e-18; Belongs to the bacterial ribosomal protein bL28 family. | formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates (By similarity). | 0.555 |
SCO5565 | SCO5564 | gene:17763223 | gene:17763222 | SC7A1.09, unknown, len: 589 aa; similar to several hypothetical proteins eg.TR:O34751 (EMBL:Z99112) YLOV protein from Bacillus subtilis (553 aa) fasta scores; opt: 656, z-score: 464.3, E(): 1.4e-18, (28.9% identity in 582 aa overlap) and to TR:AAK47378 (EMBL:AE007126) Mycobacterium tuberculosis CDC1551 hypothetical protein MT3052, 470 aa; fasta scores: opt: 772 Z-score: 726.0 E(): 8.3e-33; 40.974% identity in 493 aa overlap. | SC7A1.08c, rpmB, 50S ribosomal protein L28, len: 61aa; similar to many including SW:RL28_BACSU RpmB 50S ribosomal protein L28 from Bacillus subtilis (62 aa) fasta scores; opt: 171, z-score: 301.8, E(): 1.6e-09, (41.0% identity in 61 aa overlap). Contains Pfam match to entry PF00830 Ribosomal_L28, Ribosomal L28 family, score 74.50, E-value 2.2e-18; Belongs to the bacterial ribosomal protein bL28 family. | 0.747 |
SCO5565 | SCO5566 | gene:17763223 | gene:17763224 | SC7A1.09, unknown, len: 589 aa; similar to several hypothetical proteins eg.TR:O34751 (EMBL:Z99112) YLOV protein from Bacillus subtilis (553 aa) fasta scores; opt: 656, z-score: 464.3, E(): 1.4e-18, (28.9% identity in 582 aa overlap) and to TR:AAK47378 (EMBL:AE007126) Mycobacterium tuberculosis CDC1551 hypothetical protein MT3052, 470 aa; fasta scores: opt: 772 Z-score: 726.0 E(): 8.3e-33; 40.974% identity in 493 aa overlap. | Putative ATP-dependent DNA helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.922 |
SCO5565 | SCO5567 | gene:17763223 | gene:17763225 | SC7A1.09, unknown, len: 589 aa; similar to several hypothetical proteins eg.TR:O34751 (EMBL:Z99112) YLOV protein from Bacillus subtilis (553 aa) fasta scores; opt: 656, z-score: 464.3, E(): 1.4e-18, (28.9% identity in 582 aa overlap) and to TR:AAK47378 (EMBL:AE007126) Mycobacterium tuberculosis CDC1551 hypothetical protein MT3052, 470 aa; fasta scores: opt: 772 Z-score: 726.0 E(): 8.3e-33; 40.974% identity in 493 aa overlap. | SC7A1.11, possible DNA methylase, len: 195aa; similar to many hypotheticals some of which contain PS00092 N-6 Adenine-specific DNA methylases signature eg. SW:YHHF_ECOLI hypothetical protein from Escherichia coli (198 aa) fasta scores; opt: 340, z-score: 430.7, E(): 1.1e-16, (35.8% identity in 193 aa overlap). Contains PS00092 N-6 Adenine-specific DNA methylases signature although not in the expected N-terminal region. | 0.790 |
SCO5565 | SCO5568 | gene:17763223 | gene:17763226 | SC7A1.09, unknown, len: 589 aa; similar to several hypothetical proteins eg.TR:O34751 (EMBL:Z99112) YLOV protein from Bacillus subtilis (553 aa) fasta scores; opt: 656, z-score: 464.3, E(): 1.4e-18, (28.9% identity in 582 aa overlap) and to TR:AAK47378 (EMBL:AE007126) Mycobacterium tuberculosis CDC1551 hypothetical protein MT3052, 470 aa; fasta scores: opt: 772 Z-score: 726.0 E(): 8.3e-33; 40.974% identity in 493 aa overlap. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.780 |
SCO5565 | SCO5570 | gene:17763223 | gene:17763228 | SC7A1.09, unknown, len: 589 aa; similar to several hypothetical proteins eg.TR:O34751 (EMBL:Z99112) YLOV protein from Bacillus subtilis (553 aa) fasta scores; opt: 656, z-score: 464.3, E(): 1.4e-18, (28.9% identity in 582 aa overlap) and to TR:AAK47378 (EMBL:AE007126) Mycobacterium tuberculosis CDC1551 hypothetical protein MT3052, 470 aa; fasta scores: opt: 772 Z-score: 726.0 E(): 8.3e-33; 40.974% identity in 493 aa overlap. | Hypothetical protein; SC7A1.14, unknown, len: 217 aa; similar to Y06F_MYCTU hypothetical protein from Mycobacterium tuberculosis (207 aa) fasta scores; opt: 244, z-score: 699.9, E(): 1.1e-31, (45.5% identity in 189 aa overlap). | 0.642 |
SCO5565 | SCO5571 | gene:17763223 | gene:17763229 | SC7A1.09, unknown, len: 589 aa; similar to several hypothetical proteins eg.TR:O34751 (EMBL:Z99112) YLOV protein from Bacillus subtilis (553 aa) fasta scores; opt: 656, z-score: 464.3, E(): 1.4e-18, (28.9% identity in 582 aa overlap) and to TR:AAK47378 (EMBL:AE007126) Mycobacterium tuberculosis CDC1551 hypothetical protein MT3052, 470 aa; fasta scores: opt: 772 Z-score: 726.0 E(): 8.3e-33; 40.974% identity in 493 aa overlap. | SC7A1.15, rpmF, 50S ribosomal protein L32, len: 57 aa; similar to many eg. SW:RL32_BACST 50S PrmF, ribosomal protein L32 from Bacillus stearothermophilus (56 aa) fasta scores; opt: 180, z-score: 341.1, E(): 1.1e-11, (48.1% identity in 54 aa overlap). | 0.642 |
SCO5565 | SCO5572 | gene:17763223 | gene:17763230 | SC7A1.09, unknown, len: 589 aa; similar to several hypothetical proteins eg.TR:O34751 (EMBL:Z99112) YLOV protein from Bacillus subtilis (553 aa) fasta scores; opt: 656, z-score: 464.3, E(): 1.4e-18, (28.9% identity in 582 aa overlap) and to TR:AAK47378 (EMBL:AE007126) Mycobacterium tuberculosis CDC1551 hypothetical protein MT3052, 470 aa; fasta scores: opt: 772 Z-score: 726.0 E(): 8.3e-33; 40.974% identity in 493 aa overlap. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. May modulate key aspects of gene expression as its absence has extensive effects on the abundance of about 200 different transcripts. Probably processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. Belongs to the ribonuclease III family. | 0.650 |
SCO5565 | SCO5573 | gene:17763223 | gene:17763231 | SC7A1.09, unknown, len: 589 aa; similar to several hypothetical proteins eg.TR:O34751 (EMBL:Z99112) YLOV protein from Bacillus subtilis (553 aa) fasta scores; opt: 656, z-score: 464.3, E(): 1.4e-18, (28.9% identity in 582 aa overlap) and to TR:AAK47378 (EMBL:AE007126) Mycobacterium tuberculosis CDC1551 hypothetical protein MT3052, 470 aa; fasta scores: opt: 772 Z-score: 726.0 E(): 8.3e-33; 40.974% identity in 493 aa overlap. | formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates (By similarity). | 0.634 |