STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCO7800Hypothetical protein; SC10B8A.10, unknown, doubtful CDS, len: 71 aa. (71 aa)    
Predicted Functional Partners:
SCO7801
SC10B8A.11, possible membrane protein, len: 126aa; contains possible membrane-spanning hydrophobic regions.
       0.714
SCO7798
SC10B8A.08c, possible transposase, len: 172aa; similar to many eg. TR:O69928 (EMBL:AL023861) putative transposase from Streptomyces coelicolor (152 aa) fasta scores; opt: 604, z-score: 704.2, E(): 9.3e-32, 62.7% identity in 150 aa overlap. Overlaps with neighbouring CDS SC10B8A.09c putative transposase. Contains TTA encoded leucine residue, possible target for bldA regulation.
       0.565
SCO7799
SC10B8A.09c, possible transposase, len: 159aa; similar to many eg. TR:O69927 (EMBL:AL023861) putative transposase from Streptomyces coelicolor (152 aa) fasta scores; opt: 400, z-score: 481.0, E(): 2.5e-19, 59.6% identity in 104 aa overlap. Contains Pfam match to entry PF01511 Transposase_6, Transposase. Overlaps with neighbouring CDS SC10B8A.08c putative transposase.
       0.565
Your Current Organism:
Streptomyces coelicolor
NCBI taxonomy Id: 100226
Other names: S. coelicolor A3(2), Streptomyces coelicolor A3(2)
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.