STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCP1.170SCP1.170, possible integral membrane protein, len: 330aa; similar to TR:Q9L0R7 (EMBL:AL160312) putative integral membrane protein from Streptomyces coelicolor (345 aa) fasta scores; opt: 385, z-score: 452.0, E(): 1e-17, 29.8% identity in 292 aa overlap. Contains possible membrane-spanning hydrophobic regions. (330 aa)    
Predicted Functional Partners:
SCP1.171
SCP1.171, possible integral membrane protein, len: 297aa; similar to TR:Q9L0R6 (EMBL:AL160312) putative integral membrane protein from Streptomyces coelicolor (302 aa) fasta scores; opt: 379, z-score: 425.8, E(): 3e-16, 30.3% identity in 297 aa overlap. Contains possible membrane-spanning hydrophobic regions.
 
     0.957
SCP1.174
SCP1.174, possible membrane protein, len: 147aa; similar to TR:Q9KY94 (EMBL:AL356813) putative septum site-determining protein from Streptomyces coelicolor (131 aa) fasta scores; opt: 129, z-score: 161.9, E(): 0.15, 33.3% identity in 141 aa overlap. Contains a possible membrane-spanning hydrophobic region.
 
  
 0.949
SCP1.173
SCP1.173, possible membrane protein, len: 139aa; contains a possible membrane-spanning hydrophobic region.
 
  
 0.948
SCP1.167
SCP1.167, possible membrane protein, len: 227aa; weakly similar to TR:Q9L0S0 (EMBL:AL160312) hypothetical protein from Streptomyces coelicolor (239 aa) fasta scores; opt: 202, z-score: 221.4, E(): 7.3e-05, 27.2% identity in 235 aa overlap. Note possible alternative downstream start codons.
 
    0.929
SCP1.168
Hypothetical protein; SCP1.168, unknown, len: 292aa; similar to TR:Q9L0R9 (EMBL:AL160312) hypothetical protein from Streptomyces coelicolor (293 aa) fasta scores; opt: 262, z-score: 304.0, E(): 1.8e-09, 30.3% identity in 300 aa overlap.
 
     0.922
SCP1.175
SCP1.175, possible membrane protein, len: 147aa; contains a possible membrane-spanning hydrophobic region.
 
     0.922
SCP1.176
SCP1.176, possible large membrane protein, len: 1203aa; N-terminal region contains three possible membrane-spanning hydrophobic regions. Remainder similar to TR:Q9XAP0 (EMBL:AL078618) hypothetical protein from Streptomyces coelicolor (726 aa) fasta scores; opt: 457, z-score: 394.3, E(): 1.7e-14, 26.8% identity in 898 aa overlap.
 
     0.920
SCP1.166
SCP1.166, possible ATP/GTP-binding protein, len: 300aa; contains Prosite match to PS00017 ATP/GTP-binding site motif A (P-loop).
 
     0.899
SCO4531
2SCD4.02, possible septum determining protein, len: 145 aa; similar to TR:CAB92601 (EMBL:AL356813) Streptomyces coelicolor putative septum determining protein MinD3, 131 aa; fasta scores: opt: 115 z-score: 155.7 E(): 0.33; 30.7% identity in 137 aa overlap. Contains possible hydrophobic membrane spanning region.
 
  
 0.852
SCP1.169
SCP1.169, possible ATP/GTP-binding protein, len: 537aa; contains Prosite match to PS00017 ATP/GTP-binding site motif A (P-loop).
 
  
 0.852
Your Current Organism:
Streptomyces coelicolor
NCBI taxonomy Id: 100226
Other names: S. coelicolor A3(2), Streptomyces coelicolor A3(2)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.