Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SCP1.195c | SCP1.196 | gene:17765700 | gene:17765701 | SCP1.195c, possible ATP/GTP-binding protein, len: 349aa; contains Prosite match to PS00017 ATP/GTP-binding site motif A (P-loop). Note - correct CDS location may be on opposite strand. | SCP1.196, possible DNA primase/helicase, len: 506aa; previously sequenced and annotated as TR:Q9L8S3 (EMBL:AF195093), note discrepency: SCP1.196 translational start site is 239 bases upstream of that designated for TR:Q9L8S3. Similar to others eg. TR:Q9ZX10 (EMBL:AF068845) GP70 from Mycobacteriophage TM4 (867 aa) fasta scores; opt: 1104, z-score: 1313.5, E(): 0, 42.6% identity in 470 aa overlap. Contains Prosite match to PS00017 ATP/GTP-binding site motif A (P-loop). | 0.572 |
| SCP1.195c | SCP1.197 | gene:17765700 | gene:17765702 | SCP1.195c, possible ATP/GTP-binding protein, len: 349aa; contains Prosite match to PS00017 ATP/GTP-binding site motif A (P-loop). Note - correct CDS location may be on opposite strand. | Hypothetical protein; SCP1.197, unknown, len: 133aa; previously sequenced as TR:Q9RMI9 (EMBL:AF195093). | 0.572 |
| SCP1.196 | SCP1.195c | gene:17765701 | gene:17765700 | SCP1.196, possible DNA primase/helicase, len: 506aa; previously sequenced and annotated as TR:Q9L8S3 (EMBL:AF195093), note discrepency: SCP1.196 translational start site is 239 bases upstream of that designated for TR:Q9L8S3. Similar to others eg. TR:Q9ZX10 (EMBL:AF068845) GP70 from Mycobacteriophage TM4 (867 aa) fasta scores; opt: 1104, z-score: 1313.5, E(): 0, 42.6% identity in 470 aa overlap. Contains Prosite match to PS00017 ATP/GTP-binding site motif A (P-loop). | SCP1.195c, possible ATP/GTP-binding protein, len: 349aa; contains Prosite match to PS00017 ATP/GTP-binding site motif A (P-loop). Note - correct CDS location may be on opposite strand. | 0.572 |
| SCP1.196 | SCP1.197 | gene:17765701 | gene:17765702 | SCP1.196, possible DNA primase/helicase, len: 506aa; previously sequenced and annotated as TR:Q9L8S3 (EMBL:AF195093), note discrepency: SCP1.196 translational start site is 239 bases upstream of that designated for TR:Q9L8S3. Similar to others eg. TR:Q9ZX10 (EMBL:AF068845) GP70 from Mycobacteriophage TM4 (867 aa) fasta scores; opt: 1104, z-score: 1313.5, E(): 0, 42.6% identity in 470 aa overlap. Contains Prosite match to PS00017 ATP/GTP-binding site motif A (P-loop). | Hypothetical protein; SCP1.197, unknown, len: 133aa; previously sequenced as TR:Q9RMI9 (EMBL:AF195093). | 0.812 |
| SCP1.197 | SCP1.195c | gene:17765702 | gene:17765700 | Hypothetical protein; SCP1.197, unknown, len: 133aa; previously sequenced as TR:Q9RMI9 (EMBL:AF195093). | SCP1.195c, possible ATP/GTP-binding protein, len: 349aa; contains Prosite match to PS00017 ATP/GTP-binding site motif A (P-loop). Note - correct CDS location may be on opposite strand. | 0.572 |
| SCP1.197 | SCP1.196 | gene:17765702 | gene:17765701 | Hypothetical protein; SCP1.197, unknown, len: 133aa; previously sequenced as TR:Q9RMI9 (EMBL:AF195093). | SCP1.196, possible DNA primase/helicase, len: 506aa; previously sequenced and annotated as TR:Q9L8S3 (EMBL:AF195093), note discrepency: SCP1.196 translational start site is 239 bases upstream of that designated for TR:Q9L8S3. Similar to others eg. TR:Q9ZX10 (EMBL:AF068845) GP70 from Mycobacteriophage TM4 (867 aa) fasta scores; opt: 1104, z-score: 1313.5, E(): 0, 42.6% identity in 470 aa overlap. Contains Prosite match to PS00017 ATP/GTP-binding site motif A (P-loop). | 0.812 |