STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGK14351.1Hypothetical protein; COG: COG0792; Belongs to the UPF0102 family. (142 aa)    
Predicted Functional Partners:
comM
Competence protein ComM; COG: COG0606.
 
    0.581
EGK14350.1
Transporter; COG: COG2823.
       0.556
rsmI
Tetrapyrrole methylase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.496
EGK12888.1
DNA processing chain A; COG: COG0758.
 
    0.456
purF2
Amidophosphoribosyltransferase family protein.
 
    0.444
EGK14349.1
Alpha/beta hydrolase fold-3.
       0.410
Your Current Organism:
Psychrobacter sp. 1501
NCBI taxonomy Id: 1002339
Other names: P. sp. 1501(2011), Psychrobacter sp. 1501(2011)
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.