node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CsrD | fis | HMPREF0880_01556 | HMPREF0880_01544 | KEGG: ttu:TERTU_3984 8.3e-19 PAS sensor diguanylate cyclase/phophodiesterase; K13924 two-component system, chemotaxis family, CheB/CheR fusion protein; Psort location: CytoplasmicMembrane, score: 8.78. | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | 0.502 |
PriB | RpsT | HMPREF0880_00287 | HMPREF0880_00551 | Primosomal replication protein N domain protein. | Ribosomal protein S20; KEGG: apb:SAR116_1560 6.4e-08 ribosomal protein S20p K02968; Psort location: Cytoplasmic, score: 9.67. | 0.516 |
PriB | fis | HMPREF0880_00287 | HMPREF0880_01544 | Primosomal replication protein N domain protein. | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | 0.598 |
PriB | rpsR | HMPREF0880_00287 | HMPREF0880_00288 | Primosomal replication protein N domain protein. | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.983 |
RpsT | PriB | HMPREF0880_00551 | HMPREF0880_00287 | Ribosomal protein S20; KEGG: apb:SAR116_1560 6.4e-08 ribosomal protein S20p K02968; Psort location: Cytoplasmic, score: 9.67. | Primosomal replication protein N domain protein. | 0.516 |
RpsT | dusB | HMPREF0880_00551 | HMPREF0880_01545 | Ribosomal protein S20; KEGG: apb:SAR116_1560 6.4e-08 ribosomal protein S20p K02968; Psort location: Cytoplasmic, score: 9.67. | tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | 0.470 |
RpsT | fis | HMPREF0880_00551 | HMPREF0880_01544 | Ribosomal protein S20; KEGG: apb:SAR116_1560 6.4e-08 ribosomal protein S20p K02968; Psort location: Cytoplasmic, score: 9.67. | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | 0.567 |
RpsT | rpoZ | HMPREF0880_00551 | HMPREF0880_01290 | Ribosomal protein S20; KEGG: apb:SAR116_1560 6.4e-08 ribosomal protein S20p K02968; Psort location: Cytoplasmic, score: 9.67. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.818 |
RpsT | rpsR | HMPREF0880_00551 | HMPREF0880_00288 | Ribosomal protein S20; KEGG: apb:SAR116_1560 6.4e-08 ribosomal protein S20p K02968; Psort location: Cytoplasmic, score: 9.67. | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.987 |
dusA | fis | HMPREF0880_00153 | HMPREF0880_01544 | tRNA dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | 0.686 |
dusB | RpsT | HMPREF0880_01545 | HMPREF0880_00551 | tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | Ribosomal protein S20; KEGG: apb:SAR116_1560 6.4e-08 ribosomal protein S20p K02968; Psort location: Cytoplasmic, score: 9.67. | 0.470 |
dusB | fis | HMPREF0880_01545 | HMPREF0880_01544 | tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | 0.967 |
dusB | polA | HMPREF0880_01545 | HMPREF0880_01522 | tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.414 |
dusB | prmA | HMPREF0880_01545 | HMPREF0880_01547 | tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.547 |
dusB | rpsR | HMPREF0880_01545 | HMPREF0880_00288 | tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.517 |
dusC | fis | HMPREF0880_04392 | HMPREF0880_01544 | tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily. | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | 0.686 |
fis | CsrD | HMPREF0880_01544 | HMPREF0880_01556 | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | KEGG: ttu:TERTU_3984 8.3e-19 PAS sensor diguanylate cyclase/phophodiesterase; K13924 two-component system, chemotaxis family, CheB/CheR fusion protein; Psort location: CytoplasmicMembrane, score: 8.78. | 0.502 |
fis | PriB | HMPREF0880_01544 | HMPREF0880_00287 | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | Primosomal replication protein N domain protein. | 0.598 |
fis | RpsT | HMPREF0880_01544 | HMPREF0880_00551 | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | Ribosomal protein S20; KEGG: apb:SAR116_1560 6.4e-08 ribosomal protein S20p K02968; Psort location: Cytoplasmic, score: 9.67. | 0.567 |
fis | dusA | HMPREF0880_01544 | HMPREF0880_00153 | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | tRNA dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. | 0.686 |