STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SapCPeptide transport system permease protein SapC; KEGG: ckl:CKL_1051 1.8e-35 oppC; hypothetical protein K02034; Psort location: CytoplasmicMembrane, score: 10.00. (296 aa)    
Predicted Functional Partners:
SapD
KEGG: eam:EAMY_1883 1.6e-153 sapD; peptide ABC transport system, ATPase component K02031; Psort location: CytoplasmicMembrane, score: 8.78; Belongs to the ABC transporter superfamily.
 
 0.997
SapB
Peptide transport system permease protein SapB; KEGG: smd:Smed_0330 1.3e-55 nickel-transporting ATPase K12369; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.997
SapF
Peptide transport system ATP-binding protein SapF; KEGG: eic:NT01EI_1825 6.6e-109 glutathione import ATP-binding protein GsiA K02032; Psort location: CytoplasmicMembrane, score: 8.78.
 
 0.996
SapA
Peptide transport periplasmic protein SapA; KEGG: shn:Shewana3_2650 1.3e-120 acetate kinase K02035; Psort location: Cellwall, score: 9.21.
 
 0.996
DppD
KEGG: rru:Rru_A2359 1.9e-111 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K12371; Psort location: CytoplasmicMembrane, score: 9.96.
     0.803
DppF
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A2360 7.7e-99 dppF; dipeptide transporter ATP-binding subunit K12372; Psort location: CytoplasmicMembrane, score: 9.96; Belongs to the ABC transporter superfamily.
 
     0.788
DppB
KEGG: ctu:Ctu_40450 8.5e-171 dppB; dipeptide transporter permease DppB K12369; Psort location: CytoplasmicMembrane, score: 10.00.
   
 0.785
EHM48399.1
Putative dipeptide ABC transporter, permease protein DppB.
   
 0.784
GsiC
Glutathione ABC transporter, permease protein GsiC; KEGG: amt:Amet_2908 3.4e-73 nickel-transporting ATPase K02033; Psort location: CytoplasmicMembrane, score: 10.00.
     0.782
EHM47684.1
KEGG: ctu:Ctu_20820 4.7e-250 dppA; periplasmic dipeptide transport protein; Psort location: Cellwall, score: 9.14.
 
  
 0.774
Your Current Organism:
Yokenella regensburgei
NCBI taxonomy Id: 1002368
Other names: Y. regensburgei ATCC 43003, Yokenella regensburgei ATCC 43003, Yokenella regensburgei str. ATCC 43003, Yokenella regensburgei strain ATCC 43003
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