STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ70209.1Phage major capsid protein E. (341 aa)    
Predicted Functional Partners:
SFQ70258.1
Phage portal protein, lambda family.
 
    0.934
SFQ70274.1
Phage terminase, large subunit GpA.
 
    0.915
SFQ70222.1
Serine protease, ClpP class.
 
    0.848
SFQ70185.1
Prophage minor tail protein Z (GPZ).
  
    0.796
SFQ70162.1
Hypothetical protein.
  
    0.720
SFQ70282.1
Hypothetical protein.
  
  
 0.693
SFQ70180.1
Hypothetical protein.
       0.671
SFQ70194.1
Hypothetical protein.
       0.671
SFQ70204.1
Hypothetical protein.
       0.671
SFQ70172.1
Hypothetical protein.
       0.666
Your Current Organism:
Pseudomonas formosensis
NCBI taxonomy Id: 1002526
Other names: BCRC 80437, JCM 18415, P. formosensis, Pseudomonas formosensis Lin et al. 2013, Pseudomonas sp. CC-CY503, strain CC-CY503
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.