STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ68197.1LysR family transcriptional regulator, cys regulon transcriptional activator; Belongs to the LysR transcriptional regulatory family. (324 aa)    
Predicted Functional Partners:
SFQ58702.1
Sigma E regulatory protein, MucB/RseB.
  
     0.504
SFQ68207.1
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
       0.501
SFQ82488.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.490
SFQ82973.1
Uroporphyrin-3 C-methyltransferase.
  
     0.420
SFQ67109.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.408
Your Current Organism:
Pseudomonas formosensis
NCBI taxonomy Id: 1002526
Other names: BCRC 80437, JCM 18415, P. formosensis, Pseudomonas formosensis Lin et al. 2013, Pseudomonas sp. CC-CY503, strain CC-CY503
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.