STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ86493.1Cysteine desulfuration protein SufE. (139 aa)    
Predicted Functional Partners:
SFQ86503.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 0.999
SFQ81293.1
Selenocysteine lyase/Cysteine desulfurase.
 
 0.975
SFQ86507.1
Fe-S cluster assembly protein SufD.
 
 
 0.959
SFQ86511.1
Fe-S cluster assembly ATP-binding protein.
 
   0.956
SFQ86521.1
Fe-S cluster assembly protein SufB.
 
 
 0.946
SFQ86497.1
Probable FeS assembly SUF system protein SufT.
 
     0.849
SFQ86499.1
Fe-S cluster assembly protein SufA; Belongs to the HesB/IscA family.
  
  
 0.798
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
     
 0.584
SFQ86490.1
Diguanylate cyclase (GGDEF) domain-containing protein.
       0.566
nfuA
Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
 
  
 0.539
Your Current Organism:
Pseudomonas formosensis
NCBI taxonomy Id: 1002526
Other names: BCRC 80437, JCM 18415, P. formosensis, Pseudomonas formosensis Lin et al. 2013, Pseudomonas sp. CC-CY503, strain CC-CY503
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.