STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCB80567.1mdaB protein homolog. (194 aa)    
Predicted Functional Partners:
CCB79144.1
Aspartate aminotransferase.
   
    0.764
CCB79325.1
Carboxynorspermidine decarboxylase, putative; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
    
  0.725
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.725
CCB80604.1
N-succinyl-L,L-diaminopimelate aminotransferase alternative.
   
    0.609
CCB80568.1
Hyaluronate lyase precursor.
       0.570
amiE
Aliphatic amidase amiE; Also exhibits in vitro acyl transferase activity, transferring the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates.
  
    0.546
CCB79676.1
Na+/H+ antiporter.
  
 
 0.442
CCB80621.1
Glutathione-regulated potassium-efflux system protein KefB.
  
 
 0.442
CCB79082.1
Oxygen-insensitive NAD(P)H nitroreductase.
 
  
 0.410
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.400
Your Current Organism:
Helicobacter bizzozeronii CIII1
NCBI taxonomy Id: 1002804
Other names: H. bizzozeronii CIII-1, Helicobacter bizzozeronii CIII-1, Helicobacter bizzozeronii str. CIII-1, Helicobacter bizzozeronii strain CIII-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.