STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I79_001789Regulator of nonsense transcripts 2. (381 aa)    
Predicted Functional Partners:
Upf1
Regulator of nonsense transcripts 1.
   
 0.963
Rnps1
RNA-binding protein with serine-rich domain 1.
    
 0.962
Smg1
Serine/threonine-protein kinase SMG1.
   
 
 0.922
Upf2
Regulator of nonsense transcripts 2.
 
     0.918
Rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.894
I79_014275
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.894
I79_003328
Regulator of nonsense transcripts 3A.
   
 0.870
I79_013417
Polyadenylate-binding protein 2.
    
 0.807
I79_006194
Regulator of nonsense transcripts 3B.
   
 0.801
I79_006195
Regulator of nonsense transcripts 3B.
   
 0.801
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.