STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I79_006834Collagen alpha-1(VI) chain. (822 aa)    
Predicted Functional Partners:
I79_006833
Collagen alpha-2(VI) chain.
  
0.962
Col6a2
Collagen alpha-2(VI) chain.
   
0.958
Col1a1
Collagen alpha-1(I) chain.
   
 0.931
Col3a1
Collagen alpha-1(III) chain.
   
0.817
Col1a2
Collagen alpha-2(I) chain.
   
0.791
I79_024461
Collagen alpha-3(VI) chain.
   
 0.696
I79_025227
Collagen alpha-3(VI) chain.
   
 0.696
I79_025365
Collagen alpha-3(VI) chain.
   
0.696
Dcn
Decorin; May affect the rate of fibrils formation.
   
 0.687
I79_013556
Fibrillin-1.
   
 0.673
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.