STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dhx38Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1227 aa)    
Predicted Functional Partners:
Cdc40
Pre-mRNA-processing factor 17.
   
 0.998
Cwc25
Coiled-coil domain-containing protein 49.
   
 0.996
I79_007377
Pre-mRNA-splicing factor CWC22-like.
   
 0.991
Snrnp200
U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 
 0.989
Rsrp1
Pre-mRNA-splicing factor SYF2.
    
 0.988
Bud31
Protein BUD31-like.
    
 0.986
I79_021945
Pre-mRNA-processing factor 19.
   
 0.986
Srrm2
Serine/arginine repetitive matrix protein 2.
    
 0.978
Wdr25
WD repeat-containing protein 25.
   
 0.971
Xab2
Pre-mRNA-splicing factor SYF1.
   
 0.970
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.