STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slu7Pre-mRNA-splicing factor SLU7. (564 aa)    
Predicted Functional Partners:
Cdc40
Pre-mRNA-processing factor 17.
   
 0.990
Prpf18
Pre-mRNA-splicing factor 18-like protein.
  
 0.936
I79_007377
Pre-mRNA-splicing factor CWC22-like.
   
 0.930
Rsrp1
Pre-mRNA-splicing factor SYF2.
   
 0.926
Dhx38
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
   
 0.919
Snrpf
Small nuclear ribonucleoprotein F.
    
 
 0.915
CgPICR_006774
Pre-mRNA-splicing factor SLU7.
     
 
0.900
SNRPD2
Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome.
    
 
 0.891
Crnkl1
Crooked neck-like protein 1.
   
 
 0.883
Srsf5
Splicing factor, arginine/serine-rich 5.
    
 0.872
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.