STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Col27a1Collagen alpha-1(XXVII) chain. (167 aa)    
Predicted Functional Partners:
Col8a2
Collagen alpha-2(VIII) chain.
 
   
 0.914
Col8a1
Collagen alpha-1(VIII) chain.
 
   
 0.868
Col22a1
Collagen alpha-1(XXII) chain.
   
 0.802
Tep1
Telomerase protein component 1.
    
 0.772
Pcolce2
Procollagen C-endopeptidase enhancer 2.
   
 0.771
Col6a2
Collagen alpha-2(VI) chain.
   
 0.759
Col16a1
Collagen alpha-1(XVI) chain.
 
   
 0.722
Col25a1
Collagen alpha-1(XXV) chain.
     
 0.698
I79_023463
Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
    
 
 0.694
Col4a2
Collagen alpha-2(IV) chain.
     
 0.673
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.