Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ddx58 | I79_010335 | G3HQZ5 | G3HI68 | Putative ATP-dependent RNA helicase DDX58. | 54 kDa 2'-5'-oligoadenylate synthetase-like protein 2. | 0.914 |
Ddx58 | Oasl | G3HQZ5 | G3HI67 | Putative ATP-dependent RNA helicase DDX58. | 59 kDa 2'-5'-oligoadenylate synthetase-like protein. | 0.926 |
Ddx58 | Usp18 | G3HQZ5 | G3HQ78 | Putative ATP-dependent RNA helicase DDX58. | Ubl carboxyl-terminal hydrolase 18. | 0.898 |
I79_010335 | Ddx58 | G3HI68 | G3HQZ5 | 54 kDa 2'-5'-oligoadenylate synthetase-like protein 2. | Putative ATP-dependent RNA helicase DDX58. | 0.914 |
I79_010335 | I79_022620 | G3HI68 | G3IFU7 | 54 kDa 2'-5'-oligoadenylate synthetase-like protein 2. | Ubiquitin-conjugating enzyme E2 variant 1. | 0.897 |
I79_010335 | I79_025517 | G3HI68 | G3INJ2 | 54 kDa 2'-5'-oligoadenylate synthetase-like protein 2. | Ubiquitin-conjugating enzyme E2 variant 1. | 0.897 |
I79_010335 | Mysm1 | G3HI68 | G3HH59 | 54 kDa 2'-5'-oligoadenylate synthetase-like protein 2. | Histone H2A deubiquitinase MYSM1. | 0.969 |
I79_010335 | Oasl | G3HI68 | G3HI67 | 54 kDa 2'-5'-oligoadenylate synthetase-like protein 2. | 59 kDa 2'-5'-oligoadenylate synthetase-like protein. | 0.929 |
I79_010335 | Rnd2 | G3HI68 | G3HM04 | 54 kDa 2'-5'-oligoadenylate synthetase-like protein 2. | Next to BRCA1 gene 1 protein. | 0.899 |
I79_010335 | Trip12 | G3HI68 | G3I8X6 | 54 kDa 2'-5'-oligoadenylate synthetase-like protein 2. | Putative E3 ubiquitin-protein ligase TRIP12. | 0.903 |
I79_010335 | Ube2v1 | G3HI68 | G3HET8 | 54 kDa 2'-5'-oligoadenylate synthetase-like protein 2. | Ubiquitin-conjugating enzyme E2 variant 1. | 0.897 |
I79_010335 | Ubxn7 | G3HI68 | G3GSL6 | 54 kDa 2'-5'-oligoadenylate synthetase-like protein 2. | UBX domain-containing protein 7. | 0.965 |
I79_010335 | Usp18 | G3HI68 | G3HQ78 | 54 kDa 2'-5'-oligoadenylate synthetase-like protein 2. | Ubl carboxyl-terminal hydrolase 18. | 0.849 |
I79_022620 | I79_010335 | G3IFU7 | G3HI68 | Ubiquitin-conjugating enzyme E2 variant 1. | 54 kDa 2'-5'-oligoadenylate synthetase-like protein 2. | 0.897 |
I79_022620 | I79_025517 | G3IFU7 | G3INJ2 | Ubiquitin-conjugating enzyme E2 variant 1. | Ubiquitin-conjugating enzyme E2 variant 1. | 0.771 |
I79_022620 | Oasl | G3IFU7 | G3HI67 | Ubiquitin-conjugating enzyme E2 variant 1. | 59 kDa 2'-5'-oligoadenylate synthetase-like protein. | 0.897 |
I79_022620 | Trip12 | G3IFU7 | G3I8X6 | Ubiquitin-conjugating enzyme E2 variant 1. | Putative E3 ubiquitin-protein ligase TRIP12. | 0.405 |
I79_022620 | Ube2v1 | G3IFU7 | G3HET8 | Ubiquitin-conjugating enzyme E2 variant 1. | Ubiquitin-conjugating enzyme E2 variant 1. | 0.769 |
I79_025517 | I79_010335 | G3INJ2 | G3HI68 | Ubiquitin-conjugating enzyme E2 variant 1. | 54 kDa 2'-5'-oligoadenylate synthetase-like protein 2. | 0.897 |
I79_025517 | I79_022620 | G3INJ2 | G3IFU7 | Ubiquitin-conjugating enzyme E2 variant 1. | Ubiquitin-conjugating enzyme E2 variant 1. | 0.771 |
page 1 of 3