Brix1 protein (Cricetulus griseus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Brix1

Brix domain-containing protein 2. (353 aa)

Predicted Functional Partners:

Nifk

0.998

Rpf1

0.997

Gtpbp4

0.996

Rsl1d1

0.996

BOP1

0.996

Noc2l

0.995

WDR12

0.994

Noc3l

0.994

I79_012052

0.994

H671_3g9185

0.993

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOP1	Brix1	G3HWM5	G3HKF6	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Brix domain-containing protein 2.	0.996
BOP1	Gtpbp4	G3HWM5	G3GR93	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.995
BOP1	H671_3g9185	G3HWM5	G3IBN5	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	ATP-dependent RNA helicase DDX18.	0.999
BOP1	I79_012052	G3HWM5	G3HMT0	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Brix domain-containing protein 1.	0.995
BOP1	Nifk	G3HWM5	G3H134	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	MKI67 FHA domain-interacting nucleolar phosphoprotein.	0.985
BOP1	Noc2l	G3HWM5	G3IJ36	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Putative nucleolar complex protein 2 like protein.	0.997
BOP1	Noc3l	G3HWM5	G3H9C3	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar complex protein 3 homolog.	0.995
BOP1	Rpf1	G3HWM5	G3HMI6	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome production factor 1.	0.975
BOP1	Rsl1d1	G3HWM5	G3GWL7	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal L1 domain-containing protein 1.	0.994
BOP1	WDR12	G3HWM5	G3GYV4	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
Brix1	BOP1	G3HKF6	G3HWM5	Brix domain-containing protein 2.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.996
Brix1	Gtpbp4	G3HKF6	G3GR93	Brix domain-containing protein 2.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.996
Brix1	H671_3g9185	G3HKF6	G3IBN5	Brix domain-containing protein 2.	ATP-dependent RNA helicase DDX18.	0.993
Brix1	I79_012052	G3HKF6	G3HMT0	Brix domain-containing protein 2.	Brix domain-containing protein 1.	0.994
Brix1	Nifk	G3HKF6	G3H134	Brix domain-containing protein 2.	MKI67 FHA domain-interacting nucleolar phosphoprotein.	0.998
Brix1	Noc2l	G3HKF6	G3IJ36	Brix domain-containing protein 2.	Putative nucleolar complex protein 2 like protein.	0.995
Brix1	Noc3l	G3HKF6	G3H9C3	Brix domain-containing protein 2.	Nucleolar complex protein 3 homolog.	0.994
Brix1	Rpf1	G3HKF6	G3HMI6	Brix domain-containing protein 2.	Ribosome production factor 1.	0.997
Brix1	Rsl1d1	G3HKF6	G3GWL7	Brix domain-containing protein 2.	Ribosomal L1 domain-containing protein 1.	0.996
Brix1	WDR12	G3HKF6	G3GYV4	Brix domain-containing protein 2.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.994