I79_016142 protein (Cricetulus griseus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I79_016142

Janus kinase and microtubule-interacting protein 2. (690 aa)

Predicted Functional Partners:

Grap2

0.555

Stk32b

0.479

I79_021527

0.479

Capsl

0.459

Sh3rf2

0.455

Plbd1

0.408

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Capsl	I79_016142	G3HKG2	G3HYK5	Calcyphosin-like protein.	Janus kinase and microtubule-interacting protein 2.	0.459
Grap2	I79_016142	G3HVZ8	G3HYK5	GRB2-related adaptor protein 2.	Janus kinase and microtubule-interacting protein 2.	0.555
I79_016142	Capsl	G3HYK5	G3HKG2	Janus kinase and microtubule-interacting protein 2.	Calcyphosin-like protein.	0.459
I79_016142	Grap2	G3HYK5	G3HVZ8	Janus kinase and microtubule-interacting protein 2.	GRB2-related adaptor protein 2.	0.555
I79_016142	I79_021527	G3HYK5	G3ICX3	Janus kinase and microtubule-interacting protein 2.	Serine/threonine-protein kinase 32A; Belongs to the protein kinase superfamily.	0.479
I79_016142	Plbd1	G3HYK5	G3HLB2	Janus kinase and microtubule-interacting protein 2.	Phospholipase B-like; Putative phospholipase.	0.408
I79_016142	Sh3rf2	G3HYK5	G3HHE5	Janus kinase and microtubule-interacting protein 2.	Putative E3 ubiquitin-protein ligase SH3RF2.	0.455
I79_016142	Stk32b	G3HYK5	G3GWD9	Janus kinase and microtubule-interacting protein 2.	Serine/threonine-protein kinase 32B.	0.479
I79_021527	I79_016142	G3ICX3	G3HYK5	Serine/threonine-protein kinase 32A; Belongs to the protein kinase superfamily.	Janus kinase and microtubule-interacting protein 2.	0.479
Plbd1	I79_016142	G3HLB2	G3HYK5	Phospholipase B-like; Putative phospholipase.	Janus kinase and microtubule-interacting protein 2.	0.408
Sh3rf2	I79_016142	G3HHE5	G3HYK5	Putative E3 ubiquitin-protein ligase SH3RF2.	Janus kinase and microtubule-interacting protein 2.	0.455
Stk32b	I79_016142	G3GWD9	G3HYK5	Serine/threonine-protein kinase 32B.	Janus kinase and microtubule-interacting protein 2.	0.479