Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ddx58 | H671_3g9402 | G3HQZ5 | G3I3F9 | Putative ATP-dependent RNA helicase DDX58. | Interferon regulatory factor 7. | 0.800 |
Ddx58 | I79_000870 | G3HQZ5 | G3GT94 | Putative ATP-dependent RNA helicase DDX58. | Receptor-transporting protein 4. | 0.735 |
Ddx58 | I79_012974 | G3HQZ5 | G3HQ79 | Putative ATP-dependent RNA helicase DDX58. | Putative ubiquitin carboxyl-terminal hydrolase 41. | 0.794 |
Ddx58 | I79_023218 | G3HQZ5 | G3IHC9 | Putative ATP-dependent RNA helicase DDX58. | Interferon regulatory factor 3. | 0.716 |
Ddx58 | Ifih1 | G3HQZ5 | G3HZV6 | Putative ATP-dependent RNA helicase DDX58. | Interferon-induced helicase C domain-containing protein 1. | 0.911 |
Ddx58 | Isg15 | G3HQZ5 | G3I436 | Putative ATP-dependent RNA helicase DDX58. | Ubiquitin-like protein ISG15-like protein. | 0.996 |
Ddx58 | Myd88 | G3HQZ5 | G3HQV3 | Putative ATP-dependent RNA helicase DDX58. | Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. | 0.596 |
Ddx58 | Traf3 | G3HQZ5 | G3H369 | Putative ATP-dependent RNA helicase DDX58. | TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. | 0.675 |
Ddx58 | Traf6 | G3HQZ5 | G3GZ05 | Putative ATP-dependent RNA helicase DDX58. | TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. | 0.944 |
Ddx58 | Usp18 | G3HQZ5 | G3HQ78 | Putative ATP-dependent RNA helicase DDX58. | Ubl carboxyl-terminal hydrolase 18. | 0.898 |
H671_3g9402 | Ddx58 | G3I3F9 | G3HQZ5 | Interferon regulatory factor 7. | Putative ATP-dependent RNA helicase DDX58. | 0.800 |
H671_3g9402 | I79_000870 | G3I3F9 | G3GT94 | Interferon regulatory factor 7. | Receptor-transporting protein 4. | 0.770 |
H671_3g9402 | I79_012974 | G3I3F9 | G3HQ79 | Interferon regulatory factor 7. | Putative ubiquitin carboxyl-terminal hydrolase 41. | 0.772 |
H671_3g9402 | I79_023218 | G3I3F9 | G3IHC9 | Interferon regulatory factor 7. | Interferon regulatory factor 3. | 0.903 |
H671_3g9402 | Ifih1 | G3I3F9 | G3HZV6 | Interferon regulatory factor 7. | Interferon-induced helicase C domain-containing protein 1. | 0.774 |
H671_3g9402 | Isg15 | G3I3F9 | G3I436 | Interferon regulatory factor 7. | Ubiquitin-like protein ISG15-like protein. | 0.895 |
H671_3g9402 | Myd88 | G3I3F9 | G3HQV3 | Interferon regulatory factor 7. | Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. | 0.884 |
H671_3g9402 | Traf3 | G3I3F9 | G3H369 | Interferon regulatory factor 7. | TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. | 0.771 |
H671_3g9402 | Traf6 | G3I3F9 | G3GZ05 | Interferon regulatory factor 7. | TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. | 0.907 |
H671_3g9402 | Usp18 | G3I3F9 | G3HQ78 | Interferon regulatory factor 7. | Ubl carboxyl-terminal hydrolase 18. | 0.772 |
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