STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I79_020024Ataxin-7-like protein 1. (69 aa)    
Predicted Functional Partners:
Taf10
Transcription initiation factor TFIID subunit 10.
    
 0.892
Coro1c
Coronin; Belongs to the WD repeat coronin family.
    
 
 0.876
Taf12
Transcription initiation factor TFIID subunit 12.
   
 0.863
ENY2
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates both histones H2A and H2B. The SAGA complex is recruited to specific gene promoters by activators such as MYC, where it is required for trans [...]
    
 0.861
Taf6
Transcription initiation factor TFIID subunit 6.
   
 0.849
Supt3h
Transcription initiation protein SPT3-like.
    
 0.831
I79_020647
Protein FAM48A.
    
 0.815
Usp27x
Ubiquitin carboxyl-terminal hydrolase 27; Belongs to the peptidase C19 family.
    
 0.790
I79_012488
Transcription initiation factor TFIID subunit 9B.
    
 0.790
Taf9
Transcription initiation factor TFIID subunit 9.
    
 0.790
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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