STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RereArginine-glutamic acid dipeptide repeats protein. (173 aa)    
Predicted Functional Partners:
I79_020166
Arginine-glutamic acid dipeptide repeats protein.
 
      0.900
I79_001420
Atrophin-1.
 
 
 
 0.898
Unc79
Protein unc-79-like.
      
 0.670
I79_002496
Nuclear receptor subfamily 2 group E member 1.
    
 0.609
Hdac2
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.566
Nr2e3
Photoreceptor-specific nuclear receptor.
    
 0.523
I79_006004
Protocadherin Fat 3.
    
 0.508
Fat3
Protocadherin Fat 3.
    
 0.498
Pou3f4
POU domain protein.
    
 
 0.425
Ep300
Histone acetyltransferase p300.
   
 
 0.420
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.