Wdr81 protein (Cricetulus griseus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Wdr81

WD repeat-containing protein 81. (1934 aa)

Predicted Functional Partners:

Wdr91

0.952

Vps18

0.782

Fig4

0.724

I79_021271

0.707

Pik3c3

0.704

Cog8

0.699

I79_002493

0.689

Atp6v0c

0.688

Uvrag

0.669

I79_025378

0.643

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atp6v0c	Wdr81	G3I2T6	G3IKX0	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	WD repeat-containing protein 81.	0.688
Cog8	Vps18	G3I010	G3ICK2	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.	Vacuolar protein sorting-associated protein 18-like.	0.482
Cog8	Wdr81	G3I010	G3IKX0	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.	WD repeat-containing protein 81.	0.699
Fig4	I79_021271	G3GXM2	G3IC82	Polyphosphoinositide phosphatase.	UPF0550 protein C7orf28-like.	0.579
Fig4	Pik3c3	G3GXM2	G3HX36	Polyphosphoinositide phosphatase.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.957
Fig4	Uvrag	G3GXM2	G3HUS1	Polyphosphoinositide phosphatase.	UV radiation resistance-associated gene protein.	0.493
Fig4	Vps18	G3GXM2	G3ICK2	Polyphosphoinositide phosphatase.	Vacuolar protein sorting-associated protein 18-like.	0.552
Fig4	Wdr81	G3GXM2	G3IKX0	Polyphosphoinositide phosphatase.	WD repeat-containing protein 81.	0.724
Fig4	Wdr91	G3GXM2	G3I0P3	Polyphosphoinositide phosphatase.	WD repeat-containing protein 91.	0.452
I79_002493	Wdr81	G3GXK1	G3IKX0	Translocation protein SEC63-like.	WD repeat-containing protein 81.	0.689
I79_021271	Fig4	G3IC82	G3GXM2	UPF0550 protein C7orf28-like.	Polyphosphoinositide phosphatase.	0.579
I79_021271	Pik3c3	G3IC82	G3HX36	UPF0550 protein C7orf28-like.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.574
I79_021271	Vps18	G3IC82	G3ICK2	UPF0550 protein C7orf28-like.	Vacuolar protein sorting-associated protein 18-like.	0.965
I79_021271	Wdr81	G3IC82	G3IKX0	UPF0550 protein C7orf28-like.	WD repeat-containing protein 81.	0.707
I79_021271	Wdr91	G3IC82	G3I0P3	UPF0550 protein C7orf28-like.	WD repeat-containing protein 91.	0.552
I79_025378	Wdr81	G3IN66	G3IKX0	WD repeat-containing protein 8.	WD repeat-containing protein 81.	0.643
Pik3c3	Fig4	G3HX36	G3GXM2	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Polyphosphoinositide phosphatase.	0.957
Pik3c3	I79_021271	G3HX36	G3IC82	Phosphatidylinositol 3-kinase catalytic subunit type 3.	UPF0550 protein C7orf28-like.	0.574
Pik3c3	Uvrag	G3HX36	G3HUS1	Phosphatidylinositol 3-kinase catalytic subunit type 3.	UV radiation resistance-associated gene protein.	0.996
Pik3c3	Vps18	G3HX36	G3ICK2	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Vacuolar protein sorting-associated protein 18-like.	0.672