STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U2surpU2-associated protein SR140. (189 aa)    
Predicted Functional Partners:
I79_005170
Uncharacterized protein.
   
 0.816
Cherp
Calcium homeostasis endoplasmic reticulum protein.
   
 0.816
Sf3a2
Splicing factor 3A subunit 2.
    
 0.810
Dhx15
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 0.807
Rbm17
Splicing factor 45.
   
 0.802
H671_2g5602
Splicing factor 45.
   
 0.802
I79_007465
Splicing factor 45.
   
 0.802
Ddx46
Putative ATP-dependent RNA helicase DDX46.
   
 0.792
Sf3b1
Splicing factor 3B subunit 1-like protein.
   
 0.780
Tpr
Nucleoprotein TPR.
  
    0.720
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.