Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFE41431.1 | SFE41464.1 | SAMN04488541_1001110 | SAMN04488541_1001111 | RNA polymerase sigma-70 factor, ECF subfamily. | Hypothetical protein. | 0.422 |
SFE41464.1 | SFE41431.1 | SAMN04488541_1001111 | SAMN04488541_1001110 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.422 |
SFE41464.1 | nqrA | SAMN04488541_1001111 | SAMN04488541_1001112 | Hypothetical protein. | Na+-transporting NADH:ubiquinone oxidoreductase subunit A; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. | 0.441 |
nqrA | SFE41464.1 | SAMN04488541_1001112 | SAMN04488541_1001111 | Na+-transporting NADH:ubiquinone oxidoreductase subunit A; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. | Hypothetical protein. | 0.441 |