STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE43546.1Protein of unknown function. (236 aa)    
Predicted Functional Partners:
SFE59316.1
PAS domain S-box-containing protein.
  
    0.648
SFE55728.1
Signal transduction histidine kinase.
  
    0.626
SFF16121.1
Uncharacterized membrane protein YheB, UPF0754 family.
   
    0.520
SFE75621.1
Putative adhesin.
  
  
 0.504
SFE89499.1
Putative adhesin.
  
  
 0.504
SFE43516.1
LSU ribosomal protein L31P; Belongs to the bacterial ribosomal protein bL31 family.
       0.501
SFF53748.1
Ribonucleoside-diphosphate reductase alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
   
    0.432
SFE69554.1
Phage shock protein A (PspA) family protein.
  
  
 0.405
SFE94386.1
Phage shock protein A (PspA) family protein.
  
  
 0.405
SFF55105.1
Hypothetical protein.
  
  
 0.405
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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