STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE40443.1Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (693 aa)    
Predicted Functional Partners:
SFE75076.1
PAS domain S-box-containing protein.
 
 0.984
SFF32514.1
PAS domain S-box-containing protein.
 
 0.979
SFE74532.1
PAS domain S-box-containing protein.
 0.971
SFE96632.1
Signal transduction histidine kinase.
 
 
0.943
SFF13295.1
GAF domain-containing protein.
 
 0.912
SFF31368.1
His Kinase A (phospho-acceptor) domain-containing protein.
  0.852
SFF19215.1
Signal transduction histidine kinase.
  
 
  0.841
SFE95592.1
PAS domain S-box-containing protein.
  
 
  0.839
SFE40350.1
Tetratricopeptide repeat-containing protein.
 
 
  0.838
SFF18753.1
Signal transduction histidine kinase.
  
 
  0.823
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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