Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFE52726.1 | SFE52758.1 | SAMN04488541_1002185 | SAMN04488541_1002186 | L-fuconolactonase. | Hypothetical protein. | 0.714 |
SFE52726.1 | SFE52785.1 | SAMN04488541_1002185 | SAMN04488541_1002187 | L-fuconolactonase. | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | 0.544 |
SFE52726.1 | SFE52810.1 | SAMN04488541_1002185 | SAMN04488541_1002188 | L-fuconolactonase. | Tetratricopeptide repeat-containing protein. | 0.411 |
SFE52726.1 | SFF32743.1 | SAMN04488541_1002185 | SAMN04488541_102615 | L-fuconolactonase. | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | 0.755 |
SFE52758.1 | SFE52726.1 | SAMN04488541_1002186 | SAMN04488541_1002185 | Hypothetical protein. | L-fuconolactonase. | 0.714 |
SFE52758.1 | SFE52785.1 | SAMN04488541_1002186 | SAMN04488541_1002187 | Hypothetical protein. | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | 0.547 |
SFE52758.1 | SFE52810.1 | SAMN04488541_1002186 | SAMN04488541_1002188 | Hypothetical protein. | Tetratricopeptide repeat-containing protein. | 0.440 |
SFE52758.1 | SFE52834.1 | SAMN04488541_1002186 | SAMN04488541_1002189 | Hypothetical protein. | Predicted lipoprotein. | 0.422 |
SFE52785.1 | SFE52726.1 | SAMN04488541_1002187 | SAMN04488541_1002185 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | L-fuconolactonase. | 0.544 |
SFE52785.1 | SFE52758.1 | SAMN04488541_1002187 | SAMN04488541_1002186 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | Hypothetical protein. | 0.547 |
SFE52785.1 | SFE52810.1 | SAMN04488541_1002187 | SAMN04488541_1002188 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | Tetratricopeptide repeat-containing protein. | 0.608 |
SFE52785.1 | SFE52834.1 | SAMN04488541_1002187 | SAMN04488541_1002189 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | Predicted lipoprotein. | 0.581 |
SFE52785.1 | SFF15880.1 | SAMN04488541_1002187 | SAMN04488541_101818 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | L-threonine synthase. | 0.568 |
SFE52785.1 | SFF16300.1 | SAMN04488541_1002187 | SAMN04488541_101846 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis. | 0.646 |
SFE52785.1 | SFF32743.1 | SAMN04488541_1002187 | SAMN04488541_102615 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | 0.483 |
SFE52785.1 | gyrB | SAMN04488541_1002187 | SAMN04488541_100926 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.748 |
SFE52785.1 | pdxJ | SAMN04488541_1002187 | SAMN04488541_104312 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.838 |
SFE52785.1 | rsmA | SAMN04488541_1002187 | SAMN04488541_1006110 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.681 |
SFE52810.1 | SFE52726.1 | SAMN04488541_1002188 | SAMN04488541_1002185 | Tetratricopeptide repeat-containing protein. | L-fuconolactonase. | 0.411 |
SFE52810.1 | SFE52758.1 | SAMN04488541_1002188 | SAMN04488541_1002186 | Tetratricopeptide repeat-containing protein. | Hypothetical protein. | 0.440 |
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