STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE48967.1WD40-like Beta Propeller Repeat. (373 aa)    
Predicted Functional Partners:
SFE38990.1
Peptidase family M28.
 
     0.862
SFE48944.1
Hypothetical protein.
       0.516
SFF35020.1
PA domain-containing protein.
 
      0.484
SFE39022.1
Peptidyl-prolyl cis-trans isomerase SurA.
  
 
 0.459
SFE96782.1
Iron complex outermembrane recepter protein.
  
 
   0.421
SFE49182.1
Iron complex outermembrane recepter protein.
  
 
   0.412
SFE48990.1
Glycerophosphoryl diester phosphodiesterase.
       0.401
SFE47769.1
Hemoglobin/transferrin/lactoferrin receptor protein.
  
 
   0.400
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.